BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0140100 Os06g0140100|AK063371
         (340 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G02100.3  | chr1:389876-392448 FORWARD LENGTH=333              440   e-124

>AT1G02100.3 | chr1:389876-392448 FORWARD LENGTH=333
          Length = 332

 Score =  440 bits (1132), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 210/317 (66%), Positives = 245/317 (77%), Gaps = 4/317 (1%)

Query: 22  ARSSPASVQATNDDAAASKLSCVNKGYMKDDYVHFFVRRTTKRAPIINRGYYARWSVLRK 81
           +RS+ A+VQATNDDA+ASKLSCV KGYMKDDYVH FV+R  +R+PIINRGY++RW+  RK
Sbjct: 4   SRSNRAAVQATNDDASASKLSCVKKGYMKDDYVHLFVKRPVRRSPIINRGYFSRWAAFRK 63

Query: 82  LLHQFLGAGNGSNDQNRKQILSLGAGFDTTFFQLQDEGIAPYLYVELDFKEVTSKKAAII 141
           L+ QFL +G  S    +KQILSLGAGFDTT+FQL DEG  P LYVELDFKEVTSKKAA+I
Sbjct: 64  LMSQFLLSGTSS----KKQILSLGAGFDTTYFQLLDEGNGPNLYVELDFKEVTSKKAAVI 119

Query: 142 NHYSQMKEKLGPEASISIEKGEVRSAHYKLFSADIRDIPKLDSVIQMAEMDPTLPTFIIA 201
            + SQ+++KLG  ASISI++G+V S HYKL   D+RDIPKL  VI  A+MD +LPTFIIA
Sbjct: 120 QNSSQLRDKLGANASISIDEGQVLSDHYKLLPVDLRDIPKLRDVISFADMDLSLPTFIIA 179

Query: 202 ECVLIYLDPASTSSIVIWASDKFSTAIFFLYEQIHPDDAFGEQMIINLESRGCPLLGINA 261
           ECVLIYLDP S+ +IV W+S  FSTA+FFLYEQIHPDDAFG QMI NLESRGC LL I+A
Sbjct: 180 ECVLIYLDPDSSRAIVNWSSKTFSTAVFFLYEQIHPDDAFGHQMIRNLESRGCALLSIDA 239

Query: 262 TPTLSHKENLFLDHGWQRAVAWDMLKIYNXXXXXXXXXXXXXXXXXXXXXXWHMMQEHYC 321
           +PTL  KE LFLD+GWQRAVAWDMLK+Y                       WHMMQEHYC
Sbjct: 240 SPTLLAKERLFLDNGWQRAVAWDMLKVYGSFVDTQEKRRIERLELFDEFEEWHMMQEHYC 299

Query: 322 VAYGINDAKGLFDDFGF 338
           V Y +NDA G+F DFGF
Sbjct: 300 VTYAVNDAMGIFGDFGF 316



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,635,383
Number of extensions: 259224
Number of successful extensions: 497
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 495
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 241
Effective length of database: 8,392,385
Effective search space: 2022564785
Effective search space used: 2022564785
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 112 (47.8 bits)