Os06g0134800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glycine cleavage T protein (aminomethyl transferase) family protein.
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Os06g0134800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glycine cleavage T protein (aminomethyl transferase) family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.89 | 0.318 | 10.2 | 0.938 | 1.75 | -0.618 | 0.219 | 1.01 | -0.0336 | 15.1 | 14.24 | 1097 | -- | -- |
| 47.51 | 0.321 | 10.3 | 0.786 | 1.8 | -0.508 | 0.107 | -- | -0.0845 | 15 | 15.04 | 3254 | -- | -- |
| 46.05 | 0.316 | 10.2 | 0.935 | 1.75 | -0.617 | -- | 0.959 | -0.034 | 15.1 | 14.24 | 1096 | -- | -- |
| 46.67 | 0.318 | 10.3 | 0.735 | 1.75 | -0.602 | -- | -- | -0.0863 | 15.1 | 14.09 | 1165 | -- | -- |
| 165.23 | 0.602 | 10.4 | 0.0409 | -- | 1.82 | -- | -1.28 | -0.495 | -- | 23.8 | 1136 | -- | -- |
| 52.37 | 0.339 | 10.3 | 0.555 | 1.82 | -- | 0.0979 | -- | -0.192 | 15 | -- | -- | -- | -- |
| 52.4 | 0.339 | 10.3 | 0.557 | 1.82 | -- | -- | -- | -0.192 | 15 | -- | -- | -- | -- |
| 165.71 | 0.602 | 10.3 | 0.217 | -- | 1.74 | -- | -- | -0.439 | -- | 23.9 | 1143 | -- | -- |
| 59.13 | 0.358 | 10.3 | -- | 1.77 | -0.254 | -- | -- | -0.214 | 15 | 17 | 1158 | -- | -- |
| 241.97 | 0.727 | 10.3 | 0.48 | -- | -- | -- | -- | -0.239 | -- | -- | -- | -- | -- |
| 60.59 | 0.364 | 10.3 | -- | 1.81 | -- | -- | -- | -0.254 | 15 | -- | -- | -- | -- |
| 166.92 | 0.604 | 10.3 | -- | -- | 1.77 | -- | -- | -0.466 | -- | 23.9 | 1143 | -- | -- |
| 248.05 | 0.735 | 10.3 | -- | -- | -- | -- | -- | -0.292 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.91 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 3 | 14 |
| 4 | 41.27 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 3 | 12 |
| 6 | 41.36 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 3 | 14 |
| 13 | 41.57 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 3 | 10 |
| 40 | 42.44 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 3 | 16 |
| 86 | 43.01 | humidity | 80.0 | 30 | > th | dose independent | rect. | 3 | 13 |
| 99 | 43.10 | humidity | 80.0 | 30 | > th | dose independent | rect. | 3 | 11 |
| 100 | 43.10 | radiation | 10.0 | 90 | < th | dose independent | rect. | 3 | 12 |
| 113 | 43.19 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 1 | 13 |
| 119 | 43.23 | wind | 3.0 | 270 | < th | dose independent | rect. | 2 | 3 |
| 122 | 43.25 | radiation | 10.0 | 90 | < th | dose independent | rect. | 3 | 8 |
| 125 | 43.28 | radiation | 10.0 | 90 | < th | dose independent | rect. | 3 | 10 |
| 126 | 43.28 | wind | 7.0 | 270 | < th | dose dependent | rect. | 2 | 3 |
| 138 | 43.32 | radiation | 40.0 | 90 | < th | dose dependent | sin | 6 | NA |
| 144 | 43.35 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 2 | 3 |
| 145 | 43.35 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 3 | 4 |
| 159 | 43.41 | temperature | 15.0 | 270 | > th | dose independent | rect. | 4 | 23 |
| 174 | 43.45 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 3 |
| 177 | 43.45 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 3 |
| 194 | 43.49 | humidity | 80.0 | 30 | > th | dose independent | rect. | 3 | 9 |
| 204 | 43.52 | humidity | 50.0 | 10 | > th | dose dependent | sin | 3 | NA |
| 252 | 43.66 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 3 | 4 |
| 270 | 43.71 | temperature | 10.0 | 270 | > th | dose independent | rect. | 2 | 3 |
| 272 | 43.71 | temperature | 30.0 | 270 | < th | dose independent | rect. | 2 | 3 |
| 273 | 43.71 | humidity | 50.0 | 270 | > th | dose independent | rect. | 2 | 3 |
| 276 | 43.71 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 2 | 3 |
| 279 | 43.71 | radiation | 20.0 | 270 | < th | dose independent | rect. | 2 | 3 |
| 283 | 43.71 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 21 |
| 290 | 43.72 | radiation | 1.0 | 270 | < th | dose independent | rect. | 2 | 3 |
| 297 | 43.73 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 1 |
| 298 | 43.73 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 301 | 43.73 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 3 | 19 |
| 316 | 43.78 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 14 |
| 318 | 43.78 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 21 |
| 329 | 43.79 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 18 | 4 |
| 342 | 43.82 | radiation | 20.0 | 10 | < th | dose independent | rect. | 3 | 5 |
| 374 | 43.85 | radiation | 40.0 | 90 | < th | dose independent | rect. | 3 | 12 |
| 377 | 43.85 | wind | 5.0 | 10 | < th | dose dependent | rect. | 3 | 5 |
| 391 | 43.86 | temperature | 10.0 | 90 | > th | dose independent | rect. | 7 | 20 |
| 405 | 43.89 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 3 | 4 |
| 418 | 43.91 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 1 |
| 420 | 43.91 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 1 |
| 430 | 43.94 | wind | 3.0 | 270 | < th | dose independent | rect. | 3 | 1 |
| 438 | 43.95 | wind | 9.0 | 90 | < th | dose independent | rect. | 7 | 20 |
| 464 | 44.01 | radiation | 10.0 | 10 | < th | dose independent | rect. | 3 | 7 |
| 485 | 44.05 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 6 |
| 532 | 44.11 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 18 | 12 |
| 561 | 44.15 | radiation | 1.0 | 90 | > th | dose dependent | sin | 7 | NA |
| 567 | 44.17 | humidity | 60.0 | 90 | > th | dose independent | rect. | 3 | 14 |
| 568 | 44.17 | temperature | 15.0 | 270 | > th | dose independent | rect. | 12 | 17 |
| 613 | 44.23 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 1 |
| 637 | 44.27 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 20 |
| 643 | 44.27 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 20 |
| 678 | 44.33 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 7 | 20 |
| 683 | 44.33 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 17 | 10 |
| 685 | 44.33 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 7 | 20 |
| 686 | 44.34 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 3 | 5 |
| 689 | 44.34 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 3 | 5 |
| 701 | 44.36 | radiation | 1.0 | 270 | < th | dose dependent | sin | 3 | NA |
| 711 | 44.37 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 1 |
| 713 | 44.37 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 1 |
| 714 | 44.37 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 1 |
| 717 | 44.37 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 1 |
| 718 | 44.37 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 3 | 1 |
| 720 | 44.37 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 1 |
| 743 | 44.37 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 1 |
| 791 | 44.43 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 3 | 5 |
| 810 | 44.45 | temperature | 15.0 | 270 | > th | dose independent | rect. | 11 | 19 |
| 811 | 44.45 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 5 | 20 |
| 823 | 44.46 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 3 | 1 |
| 825 | 44.46 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 18 | 5 |
| 879 | 44.52 | temperature | 15.0 | 270 | > th | dose independent | rect. | 17 | 13 |
| 881 | 44.52 | humidity | 90.0 | 10 | < th | dose dependent | sin | 4 | NA |
| 974 | 44.62 | radiation | 1.0 | 270 | < th | dose independent | sin | 4 | NA |
| 984 | 44.63 | temperature | 15.0 | 10 | > th | dose independent | rect. | 6 | 22 |