BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0134800 Os06g0134800|AK063692
         (401 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G12130.1  | chr4:7263640-7265425 FORWARD LENGTH=394            405   e-113

>AT4G12130.1 | chr4:7263640-7265425 FORWARD LENGTH=394
          Length = 393

 Score =  405 bits (1041), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 205/381 (53%), Positives = 254/381 (66%), Gaps = 23/381 (6%)

Query: 24  LACRLASRAVVRFAGPEAGRFXXXXXXXXXX---XXXXXQQXXXXXXXXXXXXXXXXXXX 80
           +A RL SR+VVRF+GP+  +F                  +                    
Sbjct: 31  MASRLKSRSVVRFSGPDTVKFLQGLLTNDVRRFGESSGEKNSAVPTPNMASVTNPPMYAA 90

Query: 81  XXXXQGRFLYDLFLYRPPPPSQLLDRTGSAPLTGERPKGNQEDEGEDEPGEVLADVDAAE 140
               QGRFLYD FLY P  P + LDRTGS P +         D G D   E+ ADVD   
Sbjct: 91  LLTPQGRFLYDFFLYSPSRPDEKLDRTGSGPGS---------DSGRDGSVELFADVDVDV 141

Query: 141 VDELLACFKRYRLRSKVEIDNVSKEFLCWQRFGRNVEHTGPSTQEPEAQSIGWGQGVDHA 200
           +DELL   K+YRLRSKV+I+NV++EF CWQR+GRN+  +                  D A
Sbjct: 142 LDELLETLKKYRLRSKVDIENVAEEFSCWQRYGRNLTGSSSVGWGGGV---------DRA 192

Query: 201 AESAAQGNGHGWEWFKDPRLDCLGYRGIFPANTIPPLVESDKEADERHYLLWRIENGVAE 260
            ES A GN +GW+W+KDPRL+CLGYR IFP++  PPLVE+DKE DE +YLLWR+E+GVAE
Sbjct: 193 GESTASGNKYGWQWYKDPRLECLGYRSIFPSDATPPLVEADKETDESNYLLWRLEHGVAE 252

Query: 261 GSTEIPKGEAIPLEYNFAGLNAISFEKGCYIGQELIARTHHRGVIRKRLMPLIFEDENGQ 320
           GS EIPKGEAIPLEYNF GLNAISF+KGCY+GQELIARTHHRGVIRKRL+PL F D NG+
Sbjct: 253 GSAEIPKGEAIPLEYNFVGLNAISFDKGCYVGQELIARTHHRGVIRKRLIPLRFIDSNGK 312

Query: 321 ELKQAVAPGSEVVDKESGKKIGTVNTALGSRGMGLLRLEEALKQNSSLAIKDNRDVRVKA 380
           EL Q +A G+EVV+  +GKK+GTV+TALGSRGMG++R+EEA K ++ LA+KD+ +V+V+A
Sbjct: 313 ELNQKIAAGAEVVESGTGKKMGTVSTALGSRGMGVMRVEEAFKPSAELAVKDSEEVKVEA 372

Query: 381 IKPDWWPVEWTQMLEQQSAVA 401
           IKP WWP EW Q  + QS VA
Sbjct: 373 IKPTWWPAEWFQ--QNQSGVA 391



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.136    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,141,115
Number of extensions: 356354
Number of successful extensions: 962
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 961
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 300
Effective length of database: 8,337,553
Effective search space: 2501265900
Effective search space used: 2501265900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)