FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0127900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Ribonucleoside-diphosphate reductase small chain (EC 1.17.4.1) (Ribonucleotide reductase) (R2 subunit).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.03 (0.0426) R2 : 0.333
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.02 (0.102) R2dC : 0.151 R2C : 0.163
β3 : 1.5 (0.156) R2dE : 0.135 R2E : 0.147
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.399 (0.0896) R2dN8 : 0.0377 R2N8 : 0.0263
σ : 0.8
deviance : 294.71
__
_____
C
peak time of C : 23.5
E
wheather : temperature
threshold : 26.96
memory length : 472
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
269.3 0.771 4.25 -1.6 1.09 1.35 3.32 -4.3 -0.191 20.5 20.94 1115 -- --
281.67 0.782 4.11 -0.461 1.08 1.25 2.99 -- 0.113 20.3 17.73 1051 -- --
297.83 0.804 4.23 -1.61 1.21 1.2 -- -3.78 -0.145 21.3 21.99 1301 -- --
294.35 0.799 4.06 -0.245 1.03 1.26 -- -- 0.452 22.8 27.39 464 -- --
368.96 0.895 4.22 -1.69 -- 1.61 -- -3.9 -0.206 -- 22.71 2181 -- --
314.66 0.832 4.06 -0.0719 1.27 -- 2.6 -- 0.375 21 -- -- -- --
335.41 0.858 4.06 -0.171 1.26 -- -- -- 0.367 21.7 -- -- -- --
336.91 0.855 4.07 -0.56 -- 1.81 -- -- 0.177 -- 24.2 718 -- --
294.71 0.8 4.03 -- 1.02 1.5 -- -- 0.399 23.5 26.96 472 -- --
429.26 0.968 4.02 -0.16 -- -- -- -- 0.365 -- -- -- -- --
336.18 0.858 4.05 -- 1.26 -- -- -- 0.386 21.6 -- -- -- --
344.69 0.865 4.05 -- -- 1.7 -- -- 0.26 -- 24.4 708 -- --
429.93 0.968 4.02 -- -- -- -- -- 0.383 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 256.32 temperature 20 720 > th dose dependent rect. 18 15
7 256.97 temperature 20 720 > th dose dependent sin 11 NA
24 259.99 temperature 10 270 > th dose dependent rect. 13 19
43 261.77 temperature 30 720 < th dose independent rect. 9 10
45 262.23 temperature 30 720 < th dose independent rect. 7 14
46 262.23 temperature 30 720 < th dose independent rect. 24 21
48 262.29 temperature 20 270 > th dose dependent rect. 23 9
57 262.56 temperature 30 270 < th dose independent rect. 9 16
66 263.16 temperature 20 30 > th dose dependent rect. 1 8
83 264.08 temperature 30 270 < th dose independent rect. 9 14
127 265.40 temperature 30 270 < th dose independent rect. 7 20
152 266.16 temperature 20 30 > th dose dependent rect. 23 10
170 266.70 temperature 30 720 < th dose independent rect. 17 19
196 266.99 temperature 20 1440 > th dose dependent rect. 1 1
197 266.99 temperature 10 10 > th dose dependent rect. 15 18
221 267.45 temperature 10 720 > th dose dependent rect. 21 10
231 267.63 temperature 30 720 < th dose independent sin 23 NA
260 268.13 temperature 20 270 > th dose independent rect. 1 7
398 269.56 temperature 30 720 < th dose independent rect. 9 4
461 270.26 humidity 90 43200 < th dose independent rect. 11 17
480 270.55 humidity 90 43200 > th dose independent rect. 11 16
491 270.65 temperature 10 270 > th dose dependent rect. 12 10
496 270.67 humidity 90 43200 > th dose dependent rect. 13 12
497 270.68 humidity 90 43200 < th dose independent rect. 12 15
522 270.84 temperature 10 720 > th dose dependent rect. 6 18
529 270.88 temperature 20 1440 > th dose independent rect. 4 1
534 270.96 temperature 20 1440 < th dose independent rect. 4 1
561 271.22 temperature 30 14400 > th dose dependent rect. 14 1
574 271.29 temperature 30 14400 < th dose independent rect. 12 1
575 271.31 temperature 30 14400 > th dose independent rect. 12 1
620 271.60 temperature 15 270 > th dose independent rect. 9 3
631 271.65 humidity 90 43200 < th dose independent rect. 24 19
632 271.66 temperature 30 14400 > th dose independent rect. 11 5
635 271.67 temperature 30 14400 > th dose independent rect. 11 7
643 271.72 temperature 30 720 < th dose independent sin 10 NA
646 271.74 temperature 30 14400 < th dose independent rect. 11 7
657 271.78 humidity 90 43200 > th dose independent sin 17 NA
677 271.80 humidity 90 43200 > th dose dependent sin 18 NA
681 271.82 temperature 30 14400 < th dose independent rect. 11 11
685 271.83 temperature 30 14400 < th dose independent rect. 11 5
701 271.85 humidity 90 43200 > th dose dependent rect. 13 3
710 271.88 humidity 90 43200 < th dose independent rect. 21 22
730 271.97 temperature 30 14400 > th dose independent rect. 14 4
741 272.01 atmosphere 1015 270 < th dose dependent rect. 12 8
745 272.03 temperature 30 14400 < th dose independent rect. 14 4
751 272.03 temperature 30 14400 < th dose independent rect. 14 10
763 272.04 temperature 30 14400 > th dose independent sin 17 NA
765 272.04 temperature 30 14400 < th dose independent rect. 14 8
768 272.04 temperature 30 14400 < th dose independent rect. 14 23
771 272.05 temperature 30 14400 < th dose independent sin 17 NA
778 272.05 temperature 30 14400 < th dose independent rect. 14 12
817 272.10 humidity 90 43200 < th dose independent sin 16 NA
864 272.14 temperature 30 14400 > th dose independent rect. 14 23
885 272.21 wind 7 90 < th dose independent rect. 14 19
978 272.34 temperature 30 14400 < th dose independent rect. 1 17
994 272.35 temperature 30 14400 < th dose independent rect. 23 19