BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0127900 Os06g0127900|AK073063
         (345 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G27060.1  | chr3:9979971-9981057 REVERSE LENGTH=333            530   e-151
AT3G23580.1  | chr3:8460261-8462574 FORWARD LENGTH=342            500   e-142

>AT3G27060.1 | chr3:9979971-9981057 REVERSE LENGTH=333
          Length = 332

 Score =  530 bits (1366), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 265/327 (81%), Positives = 290/327 (88%), Gaps = 1/327 (0%)

Query: 20  EEPLLAESSDRFSMFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHWDAALSPDERHFV 79
           EEPLL  + DRF MFPI YPQIWE YKKA ASFWTAEEVDLS D R W+ +L+  ERHF+
Sbjct: 6   EEPLLTPTPDRFCMFPIHYPQIWEMYKKAEASFWTAEEVDLSQDNRDWENSLNDGERHFI 65

Query: 80  SHVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIRDD 139
            HVLAFFAASDGIVLENLASRFMSDVQV+EARAFYGFQIAIENIHSEMYSLLL+TYI+D+
Sbjct: 66  KHVLAFFAASDGIVLENLASRFMSDVQVSEARAFYGFQIAIENIHSEMYSLLLDTYIKDN 125

Query: 140 VEKDRLFRAIDTVPAVRRKADWAMRWIDGGERFAERLVAFACVEGIFFSGSFCAIFWLKK 199
            E+D LFRAI+T+P V +KA WAM+WIDG + FAER++AFACVEGIFFSGSFC+IFWLKK
Sbjct: 126 KERDHLFRAIETIPCVAKKAQWAMKWIDGSQTFAERIIAFACVEGIFFSGSFCSIFWLKK 185

Query: 200 RGLMPGLTFSNELISRDEGLHCDFACLLYDLLRGKLDESRVQEIVADAVDIEREFVCDAL 259
           RGLMPGLTFSNELISRDEGLHCDFACLLY LL+ KL E RV+ IV DAV+IEREFVCDAL
Sbjct: 186 RGLMPGLTFSNELISRDEGLHCDFACLLYTLLKTKLSEERVKSIVCDAVEIEREFVCDAL 245

Query: 260 PVALVGMNGELMSQYIEFVADRLLMALGCKKMYNVANPFDWMELISLQGKTNFFEKRVGD 319
           P ALVGMN +LMSQYIEFVADRLL ALG  K+Y V NPFDWMELISLQGKTNFFEKRVGD
Sbjct: 246 PCALVGMNRDLMSQYIEFVADRLLGALGYGKVYGVTNPFDWMELISLQGKTNFFEKRVGD 305

Query: 320 YQKASVMSSLNG-GASCNHVFSIDEDF 345
           YQKASVMSS+NG GA  NHVFS+DEDF
Sbjct: 306 YQKASVMSSVNGNGAFDNHVFSLDEDF 332



>AT3G23580.1 | chr3:8460261-8462574 FORWARD LENGTH=342
          Length = 341

 Score =  500 bits (1287), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 237/329 (72%), Positives = 273/329 (82%), Gaps = 2/329 (0%)

Query: 17  GDMEEPLLAESSDRFSMFPIRYPQIWEFYKKAVASFWTAEEVDLSADARHWDAALSPDER 76
           G+ EEPLL   + RF+MFPIRY  IWE YKKA ASFWTAEEVDLS D + W+A L+  E+
Sbjct: 15  GESEEPLLMAQNQRFTMFPIRYKSIWEMYKKAEASFWTAEEVDLSTDVQQWEA-LTDSEK 73

Query: 77  HFVSHVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYI 136
           HF+SH+LAFFAASDGIVLENLA+RF++DVQV EARAFYGFQIA+ENIHSEMYSLLLET+I
Sbjct: 74  HFISHILAFFAASDGIVLENLAARFLNDVQVPEARAFYGFQIAMENIHSEMYSLLLETFI 133

Query: 137 RDDVEKDRLFRAIDTVPAVRRKADWAMRWIDGGERFAERLVAFACVEGIFFSGSFCAIFW 196
           +D  EKDRLF AI+T+P + +KA W + WI     FA RLVAFACVEGIFFSGSFCAIFW
Sbjct: 134 KDSKEKDRLFNAIETIPCISKKAKWCLDWIQSPMSFAVRLVAFACVEGIFFSGSFCAIFW 193

Query: 197 LKKRGLMPGLTFSNELISRDEGLHCDFACLLYDLLRGKLDESRVQEIVADAVDIEREFVC 256
           LKKRGLMPGLTFSNELISRDEGLHCDFACLLY LL+ +L   +V +IV +AV+IE EFVC
Sbjct: 194 LKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLQKQLPLEKVYQIVHEAVEIETEFVC 253

Query: 257 DALPVALVGMNGELMSQYIEFVADRLLMALGCKKMYNVANPFDWMELISLQGKTNFFEKR 316
            ALP  L+GMN  LMSQYI+FVADRLL+ LGC++ Y   NPFDWME ISLQGKTNFFEKR
Sbjct: 254 KALPCDLIGMNSNLMSQYIQFVADRLLVTLGCERTYKAENPFDWMEFISLQGKTNFFEKR 313

Query: 317 VGDYQKASVMSSLNGGASCNHVFSIDEDF 345
           VG+YQKASVMS+L  G   N+ F+ +EDF
Sbjct: 314 VGEYQKASVMSNLQNGNQ-NYEFTTEEDF 341



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.325    0.139    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,232,572
Number of extensions: 289531
Number of successful extensions: 779
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 777
Number of HSP's successfully gapped: 2
Length of query: 345
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 246
Effective length of database: 8,392,385
Effective search space: 2064526710
Effective search space used: 2064526710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 112 (47.8 bits)