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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0124300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF594 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.44 (0.0539) R2 : 0.204
β1 : 0.924 (0.203) R2dD : 0.0398 R2D : 0.0273
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.31 (0.448) R2dE : 0.0586 R2E : 0.113
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 8.6 (1.74) R2dD*E : 0.0555 R2D*E : 0.0843
γ1 : -0.235 (0.115) R2dN8 : 0.0098 R2N8 : 0.0168
σ : 1.01
deviance : 468.06
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_____
C
peak time of C : --
E
wheather : humidity
threshold : 79.39
memory length : 1342
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 4.08
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
460.7 1.01 3.44 0.902 0.381 2.17 -0.0957 8.68 -0.246 5.32 79.3 1342 3.85 --
482.89 1.02 3.42 0.695 0.428 3.35 0.259 -- -0.224 5.36 80 1349 3.23 --
460.71 1 3.43 0.895 0.384 2.17 -- 8.69 -0.245 5.4 79.14 1342 3.78 --
482.3 1.02 3.45 0.58 0.409 3.36 -- -- -0.275 5.39 79.25 1349 2.99 --
468.06 1.01 3.44 0.924 -- 2.31 -- 8.6 -0.235 -- 79.39 1342 4.08 --
548.64 1.1 3.45 0.683 0.519 -- 0.561 -- -0.31 5.59 -- -- -- --
549.33 1.1 3.46 0.685 0.522 -- -- -- -0.313 5.32 -- -- -- --
487.87 1.03 3.46 0.476 -- 3.53 -- -- -0.242 -- 77 1333 3.68 --
484.88 1.03 3.46 -- 0.413 3.46 -- -- -0.312 5.83 77.74 1320 2.86 --
563.56 1.11 3.46 0.703 -- -- -- -- -0.3 -- -- -- -- --
561.69 1.11 3.47 -- 0.534 -- -- -- -0.389 5.27 -- -- -- --
492.78 1.03 3.46 -- -- 3.4 -- -- -0.302 -- 76.97 1323 3.54 --
576.59 1.12 3.48 -- -- -- -- -- -0.378 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 449.78 humidity 90 1440 < th dose dependent rect. 5 2
2 454.74 humidity 90 1440 < th dose dependent rect. 22 10
3 455.11 humidity 80 720 < th dose dependent rect. 20 4
6 456.07 humidity 80 1440 > th dose independent rect. 6 1
8 456.19 radiation 20 1440 > th dose independent rect. 6 1
22 456.61 humidity 90 1440 < th dose dependent rect. 3 4
25 457.81 humidity 70 1440 > th dose dependent rect. 5 2
32 458.90 humidity 90 1440 < th dose dependent rect. 2 6
36 459.41 humidity 80 720 < th dose dependent rect. 21 2
37 459.54 humidity 80 1440 < th dose independent rect. 21 3
40 460.15 humidity 70 1440 > th dose dependent rect. 22 10
43 460.33 wind 7 1440 > th dose independent rect. 8 1
48 460.83 humidity 80 720 < th dose independent rect. 18 10
50 460.85 humidity 80 1440 < th dose independent rect. 21 12
52 461.39 humidity 80 1440 > th dose independent rect. 21 11
57 461.88 humidity 80 720 < th dose independent rect. 19 8
68 462.80 humidity 80 720 < th dose independent rect. 18 13
80 463.41 humidity 70 1440 > th dose dependent rect. 2 6
110 464.46 humidity 80 1440 < th dose independent sin 10 NA
117 464.84 humidity 80 720 > th dose independent rect. 21 5
137 465.73 wind 7 1440 < th dose independent rect. 8 1
140 465.86 humidity 80 720 < th dose independent sin 12 NA
143 466.04 wind 7 1440 > th dose independent rect. 1 8
153 466.36 humidity 70 1440 > th dose dependent sin 9 NA
171 466.95 temperature 20 720 < th dose independent rect. 18 1
177 467.03 humidity 90 1440 < th dose dependent rect. 3 1
184 467.39 wind 5 4320 > th dose dependent rect. 20 3
198 467.88 wind 9 4320 < th dose independent rect. 19 8
214 468.47 temperature 25 1440 < th dose dependent rect. 11 1
230 468.85 humidity 80 1440 > th dose independent sin 10 NA
236 469.00 humidity 50 1440 > th dose dependent rect. 21 7
244 469.19 humidity 80 720 > th dose independent sin 12 NA
251 469.34 humidity 80 720 > th dose independent rect. 18 8
253 469.48 temperature 20 720 < th dose independent rect. 9 11
269 469.95 humidity 90 1440 < th dose independent rect. 5 2
281 470.25 humidity 50 1440 > th dose dependent rect. 22 5
322 470.82 wind 7 4320 < th dose independent rect. 20 1
336 470.98 humidity 80 720 > th dose independent rect. 17 15
339 471.08 wind 5 1440 > th dose dependent rect. 8 1
357 471.36 wind 9 4320 > th dose dependent rect. 20 1
398 471.95 wind 7 4320 > th dose independent rect. 20 2
416 472.19 wind 3 1440 > th dose dependent rect. 7 3
429 472.38 wind 9 4320 > th dose dependent rect. 19 7
488 473.15 humidity 80 10 < th dose independent rect. 20 11
556 473.95 wind 9 4320 > th dose independent rect. 19 7
578 474.24 humidity 80 1440 > th dose dependent rect. 22 16
584 474.35 humidity 80 1440 < th dose independent rect. 20 17
705 476.11 temperature 20 1440 > th dose independent rect. 18 1
736 476.39 humidity 80 10 < th dose dependent rect. 20 11
746 476.52 humidity 80 1440 > th dose independent rect. 22 1
771 476.85 humidity 80 720 < th dose independent rect. 18 19
785 476.95 humidity 90 1440 < th dose dependent sin 10 NA
829 477.48 humidity 80 1440 > th dose independent rect. 21 17
840 477.69 temperature 20 720 > th dose independent rect. 13 7
909 478.56 wind 3 1440 > th dose dependent rect. 12 1
930 478.84 wind 7 1440 < th dose dependent rect. 7 8
960 479.22 wind 7 1440 > th dose dependent rect. 1 8