BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0124300 Os06g0124300|J065161M15
(789 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G45540.1 | chr5:18458294-18460705 REVERSE LENGTH=804 65 2e-10
AT5G45470.1 | chr5:18422164-18424764 REVERSE LENGTH=867 62 1e-09
AT4G19090.1 | chr4:10449900-10452757 FORWARD LENGTH=752 59 1e-08
AT5G45530.1 | chr5:18454316-18457222 REVERSE LENGTH=799 54 3e-07
>AT5G45540.1 | chr5:18458294-18460705 REVERSE LENGTH=804
Length = 803
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 94/217 (43%), Gaps = 29/217 (13%)
Query: 573 HSKLSWMCHNDNVTEVMLTWHIATTIL---------EAKFPKQTGATASSQAHRTVATTL 623
H+KL + + +L WHIAT +L K T ++R + L
Sbjct: 580 HTKLLQYVTEKDYDQSILLWHIATELLYQKPIDKKVTEKEEHSTNREKEEHSNREFSKIL 639
Query: 624 SKYCAYLVAFKPELLPSNLDGTQKMYGALKKELKATLGCWRYCFPKEIVGRRVAVEK-LM 682
S Y YL+ +P L+ + + G K + T + F + V + V+K LM
Sbjct: 640 SDYMMYLLIVQPTLMSA-------VSGIAKIRFRDTCEEAKDFFQRRHVDKSRYVKKNLM 692
Query: 683 QEESQGKLEGKM---PLMCKGARAGRILFEKATL----VDNEEPVWEVLAHIWTELIVFI 735
+E + L P+ KG R+ +LF+ + L ++ E +WEV++ +W EL+ +
Sbjct: 693 KEACRAILSVNTEIDPMAVKGDRSKSVLFDASVLAKELMNEGENMWEVVSKVWVELLCYA 752
Query: 736 APSGDDEVQVKAHRDALGQDAGEFISVLWALTTHTGV 772
+ D + H L + GE I+ +W L H G+
Sbjct: 753 SLHCDSQ----EHASQLSK-GGELINFVWLLMAHFGL 784
>AT5G45470.1 | chr5:18422164-18424764 REVERSE LENGTH=867
Length = 866
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 111/261 (42%), Gaps = 40/261 (15%)
Query: 538 KEVKKSIMEYLMNHID-GHAP-------LSNGWSTMQANYP--EYHSKLSWMCHNDNVTE 587
+E+ K I E L N G +P L+ G T++ N P KL + +
Sbjct: 603 RELWKFIFEELKNKSKYGDSPENAKRISLARGEWTLRENLPVDAEREKLVRYVTKVDYDQ 662
Query: 588 VMLTWHIATTILEAKFPKQTGATASSQ-----AHRTVATTLSKYCAYLVAFKPELLPSNL 642
+L WHIAT + + K+T + ++R + +S Y YL+ +P L+
Sbjct: 663 SLLMWHIATELCYQQHEKETIPEGYDEQRKHYSNREFSKIISDYMMYLLILQPGLM---- 718
Query: 643 DGTQKMYGALKKELKATLGCWRYCFPKEIV--GRRVAVEKLMQEESQGKLEGKMPLMCKG 700
++ G K + TL F + + R V L + + ++E P+ KG
Sbjct: 719 ---SEVAGIGKIRFRDTLAETHKFFQRRHIENDRSVETATLNILDVESEIE---PMGVKG 772
Query: 701 ARAGRILFEKATLVDN--------EEPVWEVLAHIWTELIVFIAPSGDDEVQVKAHRDAL 752
R+ +LF+ + L + + WE+L+ +W EL+ + A D AH + L
Sbjct: 773 DRSKSVLFDASRLAKDLAEMEKTHNKDKWEILSKVWVELLCYAACHCDS----TAHVEQL 828
Query: 753 GQDAGEFISVLWALTTHTGVT 773
+ GE I+ +W L H G+T
Sbjct: 829 SR-GGELINFVWLLMAHFGLT 848
>AT4G19090.1 | chr4:10449900-10452757 FORWARD LENGTH=752
Length = 751
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 81/194 (41%), Gaps = 22/194 (11%)
Query: 589 MLTWHIATTIL--EAKFPKQTGATASSQAHRTVATTLSKYCAYLVAFKPELLPSNLDGTQ 646
+L WHIAT + E K+ + +R ++ +S Y YL+ +P+L+
Sbjct: 568 LLIWHIATELCYQEEDSAKENCDKSEYHTNRKISKIISDYMMYLLIMQPKLM-------S 620
Query: 647 KMYGALKKELKATLGCWRYCFPKEIVGRRVAVEKLMQEESQGKLEGKMPLMCKGARAGRI 706
++ G K + TL F K + R KL +E P KG + +
Sbjct: 621 EVAGIGKIRFRDTLAEADRFFKKMGIIRDSRNVKLASKEILSADTSIEPREVKGNHSKSV 680
Query: 707 LFEKATLVDNEEPV--------WEVLAHIWTELIVFIAPSGDDEVQVKAHRDALGQDAGE 758
LFE ++L + V W++L+ +W E + A D +++ L GE
Sbjct: 681 LFEASSLAKELQRVEKNFGEDKWKILSKVWLEFLFHAASHCDATTRME-----LLSKGGE 735
Query: 759 FISVLWALTTHTGV 772
FI+ +W L H G+
Sbjct: 736 FINFVWLLMAHFGL 749
>AT5G45530.1 | chr5:18454316-18457222 REVERSE LENGTH=799
Length = 798
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 80/345 (23%), Positives = 134/345 (38%), Gaps = 83/345 (24%)
Query: 491 FKAIIRRII----WVRNLMSQPRLQFNQLSMLGGGFLPCRHPFLLQPKIVPKEVKKSIME 546
F +IRRI W++N+ R Q S +P L EV + + +
Sbjct: 454 FDLVIRRIQMMIGWIKNVNRSIRSVLRQWSKKNPMIRCTVYPLYLVFFAGIPEVFRVLWK 513
Query: 547 YL------MNHIDG-----HAPLS-NGWSTMQ---------ANYPEYHSKLSWM-----C 580
Y+ +++DG PL+ N W + A PE K+SW
Sbjct: 514 YIDRIFSVTSYLDGIRFISREPLTKNQWEFIFNEVKDKSGFAETPEVAKKVSWARGEWAL 573
Query: 581 HNDNVTEV---------------MLTWHIATTILEAKFPKQTGATASSQAH-----RTVA 620
+ + EV +L WHIAT E F K+ G + R +
Sbjct: 574 RDSKLMEVDTLMRYIEKVDYDQSLLLWHIAT---ELCFQKEEGGKMEKLSREGYDDREFS 630
Query: 621 TTLSKYCAYLVAFKPELLPSNLDGTQKMYGALK-KELKATLGCWRYCFPKEIVGRRVAVE 679
+S Y YL+ +P+L+ S + G G ++ ++ KA + GR++
Sbjct: 631 KIISDYMMYLLIMRPKLM-SEVAGI----GTIRFRDTKAEA-------ERFFKGRQIKDL 678
Query: 680 KLMQEESQGKL---EGKMPLMCKGARAGRILFEKATLV---------DNEEPVWEVLAHI 727
+ M+ S+ L P++ KG R+ +LF+ + L NE+ W VL+ +
Sbjct: 679 RDMKRASETVLLVSNDIEPILVKGDRSKSVLFDASMLAKELQNLKESSNEDGKWRVLSKV 738
Query: 728 WTELIVFIAPSGDDEVQVKAHRDALGQDAGEFISVLWALTTHTGV 772
W EL+ + A + H L + GE ++ +W L H G+
Sbjct: 739 WVELLCYAA----SHCKATEHVAQLSR-GGELLNFVWLLMAHFGL 778
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.136 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 15,852,442
Number of extensions: 631476
Number of successful extensions: 1318
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1316
Number of HSP's successfully gapped: 4
Length of query: 789
Length of database: 11,106,569
Length adjustment: 106
Effective length of query: 683
Effective length of database: 8,200,473
Effective search space: 5600923059
Effective search space used: 5600923059
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 116 (49.3 bits)