Os06g0116300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : t-snare domain containing protein.
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Os06g0116300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : t-snare domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.02 | 0.249 | 9.64 | -0.287 | 0.307 | 0.279 | -0.564 | -0.759 | -0.193 | 6.03 | 21.9 | 2370 | -- | -- |
| 28.92 | 0.25 | 9.61 | -0.106 | 0.304 | 0.356 | -0.538 | -- | -0.145 | 5.8 | 21.38 | 3165 | -- | -- |
| 28.78 | 0.25 | 9.64 | -0.293 | 0.301 | 0.281 | -- | -0.743 | -0.195 | 6.02 | 21.91 | 2490 | -- | -- |
| 29.64 | 0.254 | 9.61 | -0.126 | 0.303 | 0.376 | -- | -- | -0.148 | 5.85 | 21.2 | 3169 | -- | -- |
| 33.33 | 0.269 | 9.64 | -0.262 | -- | 0.314 | -- | -0.651 | -0.176 | -- | 21.36 | 2583 | -- | -- |
| 32.29 | 0.266 | 9.58 | 0.0867 | 0.309 | -- | -0.581 | -- | -0.0334 | 5.67 | -- | -- | -- | -- |
| 33.12 | 0.269 | 9.58 | 0.0838 | 0.306 | -- | -- | -- | -0.0309 | 5.74 | -- | -- | -- | -- |
| 34.18 | 0.272 | 9.61 | -0.11 | -- | 0.388 | -- | -- | -0.141 | -- | 21.27 | 2760 | -- | -- |
| 29.89 | 0.255 | 9.61 | -- | 0.299 | 0.326 | -- | -- | -0.125 | 6.09 | 21.4 | 2584 | -- | -- |
| 37.98 | 0.288 | 9.59 | 0.0934 | -- | -- | -- | -- | -0.0237 | -- | -- | -- | -- | -- |
| 33.3 | 0.27 | 9.59 | -- | 0.307 | -- | -- | -- | -0.0403 | 5.73 | -- | -- | -- | -- |
| 34.42 | 0.273 | 9.61 | -- | -- | 0.341 | -- | -- | -0.117 | -- | 21.3 | 2667 | -- | -- |
| 38.21 | 0.289 | 9.59 | -- | -- | -- | -- | -- | -0.034 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.22 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 12 | 27.42 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 13 | 27.45 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 27 | 27.66 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 31 | 27.69 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 38 | 27.75 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 42 | 27.75 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 6 |
| 51 | 27.81 | temperature | 15 | 90 | > th | dose dependent | rect. | 12 | 23 |
| 55 | 27.83 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 60 | 27.86 | temperature | 15 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 66 | 27.88 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 68 | 27.89 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 69 | 27.89 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 70 | 27.89 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 10 |
| 75 | 27.91 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 82 | 27.92 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 6 |
| 100 | 27.98 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 108 | 28.00 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 111 | 28.01 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 112 | 28.01 | radiation | 1 | 14400 | < th | dose dependent | rect. | 3 | 2 |
| 119 | 28.02 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 21 | 17 |
| 146 | 28.05 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 11 |
| 161 | 28.07 | humidity | 90 | 14400 | > th | dose dependent | sin | 11 | NA |
| 198 | 28.09 | humidity | 90 | 43200 | > th | dose dependent | rect. | 12 | 3 |
| 202 | 28.09 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 13 |
| 208 | 28.10 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 209 | 28.10 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 22 | 14 |
| 212 | 28.10 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 254 | 28.14 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 257 | 28.14 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 3 |
| 280 | 28.16 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 9 | NA |
| 285 | 28.16 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 11 |
| 296 | 28.17 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 298 | 28.17 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 310 | 28.17 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 9 |
| 331 | 28.18 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 10 |
| 341 | 28.19 | humidity | 90 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 353 | 28.19 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 12 |
| 365 | 28.20 | humidity | 90 | 43200 | > th | dose independent | rect. | 12 | 3 |
| 393 | 28.20 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 13 |
| 405 | 28.20 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 407 | 28.21 | radiation | 1 | 43200 | > th | dose independent | rect. | 12 | 2 |
| 425 | 28.21 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 21 | 13 |
| 439 | 28.22 | radiation | 1 | 43200 | < th | dose independent | rect. | 12 | 2 |
| 445 | 28.22 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 1 | 10 |
| 446 | 28.22 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 1 | 10 |
| 452 | 28.22 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 453 | 28.22 | radiation | 1 | 43200 | < th | dose dependent | rect. | 12 | 2 |
| 517 | 28.24 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 550 | 28.24 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 18 |
| 553 | 28.25 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 570 | 28.25 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 4 |
| 602 | 28.26 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 2 | 8 |
| 606 | 28.26 | temperature | 25 | 1440 | < th | dose dependent | sin | 12 | NA |
| 612 | 28.26 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 645 | 28.27 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 663 | 28.27 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 1 | 8 |
| 697 | 28.28 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 700 | 28.28 | temperature | 15 | 1440 | > th | dose dependent | sin | 12 | NA |
| 704 | 28.28 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 718 | 28.28 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 7 |
| 741 | 28.28 | temperature | 20 | 270 | > th | dose dependent | rect. | 1 | 21 |
| 743 | 28.29 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 745 | 28.29 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 747 | 28.29 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 4 | 5 |
| 801 | 28.30 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 804 | 28.30 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 7 |
| 867 | 28.31 | radiation | 20 | 14400 | < th | dose dependent | rect. | 3 | 2 |
| 947 | 28.32 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 948 | 28.32 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 949 | 28.33 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 971 | 28.33 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 5 |