BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0116300 Os06g0116300|J100025O14
         (183 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G26980.1  | chr5:9488724-9490604 REVERSE LENGTH=323            202   8e-53
AT3G05710.2  | chr3:1685262-1687229 FORWARD LENGTH=332            194   3e-50
AT4G02195.1  | chr4:970099-972192 REVERSE LENGTH=324              163   4e-41

>AT5G26980.1 | chr5:9488724-9490604 REVERSE LENGTH=323
          Length = 322

 Score =  202 bits (514), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 109/175 (62%), Positives = 126/175 (72%), Gaps = 7/175 (4%)

Query: 1   MATRNRTPLYRKYRDALRHVRXXXXXXXXXXXXXXXXXXXXXXVIEMAS--LLRSNRPYA 58
           MATRNRT L+RKYR++LR VR                      VIEMAS  LL  NR YA
Sbjct: 1   MATRNRTLLFRKYRNSLRSVRAPLSSSSLTGTRSGGVGP----VIEMASTSLLNPNRSYA 56

Query: 59  PLSTDDPSAASSRSAVTVGLPPAWVDVSEEISANMQRARTKMAELAKAHAKALMPSFGDG 118
           P+ST+DP   SS+ A+TVGLPPAWVDVSEEIS N+QRARTKMAEL KAHAKALMPSFGDG
Sbjct: 57  PISTEDP-GTSSKGAITVGLPPAWVDVSEEISVNIQRARTKMAELGKAHAKALMPSFGDG 115

Query: 119 RDDQRAIEILTHEVTDLLKRSEKRLQKLSMKDSSEDSNVRKNVQVMMGSYLYLLN 173
           ++DQ  IE LT E+T LLK+SEK+LQ+LS    SEDSNVRKNVQ  + + L LL+
Sbjct: 116 KEDQHNIESLTQEITFLLKKSEKQLQRLSASGPSEDSNVRKNVQRSLATDLQLLS 170



>AT3G05710.2 | chr3:1685262-1687229 FORWARD LENGTH=332
          Length = 331

 Score =  194 bits (492), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 105/168 (62%), Positives = 117/168 (69%), Gaps = 7/168 (4%)

Query: 1   MATRNRTPLYRKYRDALRHVRXXXXXXXXXXXXXXXXXXXXXX----VIEMAS--LLRSN 54
           MATRNRT L+RKYR++LR VR                          VIEMAS  LL  N
Sbjct: 1   MATRNRTLLFRKYRNSLRSVRAPMGSSSSSTLTEHNSLTGAKSGLGPVIEMASTSLLNPN 60

Query: 55  RPYAPLSTDDPSAASSRSAVTVGLPPAWVDVSEEISANMQRARTKMAELAKAHAKALMPS 114
           R YAP+ST+DP   SSR  +TVGLPP WVDVSEEIS  +QRARTKMAEL KAHAKALMPS
Sbjct: 61  RSYAPVSTEDP-GNSSRGTITVGLPPDWVDVSEEISVYIQRARTKMAELGKAHAKALMPS 119

Query: 115 FGDGRDDQRAIEILTHEVTDLLKRSEKRLQKLSMKDSSEDSNVRKNVQ 162
           FGDG++DQ  IE LT EVT LLK+SEK+LQ+LS    SEDSNVRKNVQ
Sbjct: 120 FGDGKEDQHQIETLTQEVTFLLKKSEKQLQRLSAAGPSEDSNVRKNVQ 167



>AT4G02195.1 | chr4:970099-972192 REVERSE LENGTH=324
          Length = 323

 Score =  163 bits (413), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 89/165 (53%), Positives = 111/165 (67%), Gaps = 12/165 (7%)

Query: 1   MATRNRTPLYRKYRDALRHVRXXXXXXXXXXXXXXXXXXXXXXVIEM--ASLLRSNRP-Y 57
           MATRNRT +YRK+RDA +  R                      VIEM   S  RSN   Y
Sbjct: 1   MATRNRTTVYRKHRDACKSARAPLSLSASDSFGGP--------VIEMVSGSFSRSNHSSY 52

Query: 58  APLSTDDPSAASSRSAVTVGLPPAWVDVSEEISANMQRARTKMAELAKAHAKALMPSFGD 117
           APL++ DP  +SS  A T+G+PPAWVD SEEI+ N+Q+ R KM ELAKAH+KALMP+FGD
Sbjct: 53  APLNSYDPGPSSS-DAFTIGMPPAWVDDSEEITFNIQKVRDKMNELAKAHSKALMPTFGD 111

Query: 118 GRDDQRAIEILTHEVTDLLKRSEKRLQKLSMKDSSEDSNVRKNVQ 162
            +   R +E+LTHE+TDLL++SEKRLQ LS +  SE+SN+RKNVQ
Sbjct: 112 NKGIHREVEMLTHEITDLLRKSEKRLQMLSTRGPSEESNLRKNVQ 156



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.128    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,018,654
Number of extensions: 93805
Number of successful extensions: 409
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 403
Number of HSP's successfully gapped: 3
Length of query: 183
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 91
Effective length of database: 8,584,297
Effective search space: 781171027
Effective search space used: 781171027
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 108 (46.2 bits)