Os06g0111600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Acyl carrier protein-like family protein.
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Os06g0111600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Acyl carrier protein-like family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.28 | 0.275 | 8.79 | -1.3 | 0.0782 | 0.487 | 0.342 | -0.914 | -0.0656 | 11.9 | 57 | 894 | -- | -- |
| 35.23 | 0.276 | 8.8 | -1.36 | 0.0979 | 0.436 | 0.0201 | -- | -0.074 | 10.8 | 57.41 | 909 | -- | -- |
| 34.61 | 0.274 | 8.79 | -1.31 | 0.108 | 0.441 | -- | -0.66 | -0.0712 | 10.6 | 55.16 | 927 | -- | -- |
| 35.23 | 0.276 | 8.8 | -1.36 | 0.102 | 0.426 | -- | -- | -0.0775 | 10.5 | 57 | 918 | -- | -- |
| 34.92 | 0.275 | 8.8 | -1.31 | -- | 0.551 | -- | -0.669 | -0.0632 | -- | 58 | 909 | -- | -- |
| 37.9 | 0.289 | 8.8 | -1.38 | 0.266 | -- | 0.0429 | -- | -0.0944 | 10.2 | -- | -- | -- | -- |
| 37.91 | 0.288 | 8.8 | -1.38 | 0.266 | -- | -- | -- | -0.0944 | 10.2 | -- | -- | -- | -- |
| 35.6 | 0.278 | 8.8 | -1.36 | -- | 0.525 | -- | -- | -0.0725 | -- | 58.95 | 901 | -- | -- |
| 83.23 | 0.425 | 8.77 | -- | 0.0732 | 0.574 | -- | -- | 0.0652 | 12.7 | 41.86 | 912 | -- | -- |
| 42.2 | 0.304 | 8.8 | -1.38 | -- | -- | -- | -- | -0.0949 | -- | -- | -- | -- | -- |
| 87.77 | 0.438 | 8.76 | -- | 0.274 | -- | -- | -- | 0.0588 | 10.6 | -- | -- | -- | -- |
| 83.46 | 0.425 | 8.77 | -- | -- | 0.643 | -- | -- | 0.0678 | -- | 35.3 | 919 | -- | -- |
| 92.38 | 0.449 | 8.77 | -- | -- | -- | -- | -- | 0.0582 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.68 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 2 | 32.72 | humidity | 90 | 720 | > th | dose independent | rect. | 20 | 1 |
| 5 | 33.02 | humidity | 90 | 720 | > th | dose dependent | rect. | 19 | 4 |
| 22 | 33.36 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 6 |
| 37 | 33.52 | humidity | 60 | 720 | > th | dose dependent | sin | 16 | NA |
| 39 | 33.52 | humidity | 60 | 720 | > th | dose dependent | rect. | 12 | 14 |
| 41 | 33.53 | humidity | 80 | 720 | > th | dose dependent | rect. | 13 | 9 |
| 42 | 33.53 | humidity | 60 | 720 | > th | dose dependent | rect. | 14 | 11 |
| 45 | 33.54 | humidity | 60 | 720 | > th | dose dependent | rect. | 14 | 9 |
| 47 | 33.54 | humidity | 80 | 720 | > th | dose dependent | rect. | 12 | 13 |
| 52 | 33.56 | humidity | 60 | 720 | > th | dose dependent | rect. | 12 | 16 |
| 68 | 33.60 | humidity | 60 | 720 | > th | dose dependent | rect. | 12 | 18 |
| 168 | 33.76 | humidity | 80 | 720 | > th | dose independent | rect. | 15 | 4 |
| 201 | 33.80 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 205 | 33.80 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 12 |
| 249 | 33.84 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 5 |
| 301 | 33.91 | atmosphere | 1005 | 270 | < th | dose independent | rect. | 21 | 8 |
| 302 | 33.91 | humidity | 90 | 720 | > th | dose independent | rect. | 12 | 13 |
| 317 | 33.93 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 1 |
| 330 | 33.94 | radiation | 10 | 720 | < th | dose dependent | rect. | 14 | 11 |
| 331 | 33.94 | humidity | 90 | 720 | < th | dose dependent | rect. | 13 | 12 |
| 371 | 33.98 | humidity | 90 | 720 | < th | dose dependent | rect. | 14 | 7 |
| 404 | 34.01 | humidity | 90 | 720 | < th | dose dependent | sin | 16 | NA |
| 480 | 34.08 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 534 | 34.10 | radiation | 10 | 1440 | > th | dose independent | rect. | 14 | 2 |
| 544 | 34.11 | humidity | 80 | 720 | < th | dose independent | rect. | 15 | 4 |
| 549 | 34.11 | radiation | 10 | 1440 | < th | dose dependent | sin | 18 | NA |
| 570 | 34.12 | humidity | 90 | 90 | > th | dose dependent | rect. | 5 | 22 |
| 646 | 34.17 | humidity | 90 | 720 | > th | dose independent | sin | 17 | NA |
| 674 | 34.19 | humidity | 90 | 720 | < th | dose independent | rect. | 12 | 13 |
| 738 | 34.25 | radiation | 10 | 1440 | > th | dose independent | sin | 19 | NA |
| 810 | 34.29 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 4 |
| 884 | 34.34 | humidity | 90 | 720 | < th | dose independent | rect. | 19 | 6 |
| 905 | 34.36 | humidity | 90 | 720 | < th | dose independent | sin | 17 | NA |
| 916 | 34.36 | humidity | 90 | 270 | > th | dose dependent | rect. | 18 | 12 |
| 956 | 34.38 | humidity | 70 | 1440 | > th | dose dependent | rect. | 13 | 1 |