Os06g0111500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cytosolic 6-phosphogluconate dehydrogenase.
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Os06g0111500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cytosolic 6-phosphogluconate dehydrogenase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 90.71 | 0.447 | 14.2 | 0.205 | 1.74 | -0.621 | 0.144 | 1.37 | 0.414 | 16.8 | 13.01 | 1344 | -- | -- |
| 94.17 | 0.452 | 14.2 | 0.0778 | 1.71 | -0.571 | 0.081 | -- | 0.387 | 16.8 | 13.03 | 1344 | -- | -- |
| 90.58 | 0.443 | 14.2 | 0.207 | 1.75 | -0.628 | -- | 1.41 | 0.412 | 16.8 | 13.02 | 1306 | -- | -- |
| 93.77 | 0.451 | 14.2 | 0.0271 | 1.75 | -0.586 | -- | -- | 0.348 | 16.8 | 13 | 1343 | -- | -- |
| 251.59 | 0.739 | 14.2 | 0.217 | -- | -0.748 | -- | 1.52 | 0.422 | -- | 14.46 | 1337 | -- | -- |
| 104.01 | 0.478 | 14.2 | -0.125 | 1.77 | -- | 0.101 | -- | 0.176 | 16.5 | -- | -- | -- | -- |
| 104.04 | 0.478 | 14.2 | -0.125 | 1.77 | -- | -- | -- | 0.177 | 16.5 | -- | -- | -- | -- |
| 252.75 | 0.74 | 14.2 | -0.00215 | -- | -0.699 | -- | -- | 0.361 | -- | 14.22 | 1369 | -- | -- |
| 93.76 | 0.451 | 14.2 | -- | 1.74 | -0.577 | -- | -- | 0.335 | 16.8 | 13.05 | 1343 | -- | -- |
| 271 | 0.769 | 14.2 | -0.193 | -- | -- | -- | -- | 0.13 | -- | -- | -- | -- | -- |
| 104.45 | 0.478 | 14.2 | -- | 1.77 | -- | -- | -- | 0.19 | 16.5 | -- | -- | -- | -- |
| 252.65 | 0.74 | 14.2 | -- | -- | -0.735 | -- | -- | 0.359 | -- | 14.38 | 1358 | -- | -- |
| 271.99 | 0.77 | 14.2 | -- | -- | -- | -- | -- | 0.151 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 87.50 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 2 | 87.55 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 3 | 88.63 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 4 | 88.63 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 6 | 89.01 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 4 |
| 10 | 89.30 | wind | 7.0 | 720 | < th | dose independent | rect. | 16 | 13 |
| 11 | 89.37 | wind | 7.0 | 720 | < th | dose independent | rect. | 17 | 18 |
| 17 | 89.86 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 20 | 89.99 | wind | 7.0 | 720 | < th | dose independent | rect. | 17 | 10 |
| 24 | 90.24 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 9 | 6 |
| 25 | 90.32 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 28 | 90.41 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 31 | 90.48 | wind | 7.0 | 720 | < th | dose independent | rect. | 17 | 8 |
| 49 | 90.90 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 58 | 91.04 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 13 | 2 |
| 69 | 91.24 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 5 |
| 87 | 91.39 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 9 | 18 |
| 92 | 91.40 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 9 | 15 |
| 98 | 91.42 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 128 | 91.61 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 129 | 91.61 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 3 |
| 178 | 91.82 | wind | 7.0 | 270 | > th | dose independent | rect. | 22 | 7 |
| 192 | 91.88 | wind | 7.0 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 197 | 91.89 | wind | 7.0 | 720 | < th | dose independent | sin | 13 | NA |
| 204 | 91.93 | radiation | 20.0 | 1440 | < th | dose dependent | sin | 20 | NA |
| 210 | 91.98 | humidity | 90.0 | 720 | > th | dose independent | rect. | 20 | 4 |
| 222 | 92.03 | wind | 5.0 | 270 | > th | dose dependent | rect. | 22 | 7 |
| 269 | 92.09 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 276 | 92.10 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 316 | 92.18 | radiation | 10.0 | 1440 | > th | dose independent | sin | 0 | NA |
| 336 | 92.25 | wind | 7.0 | 720 | < th | dose independent | rect. | 15 | 6 |
| 346 | 92.27 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 361 | 92.31 | wind | 7.0 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 465 | 92.48 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 11 | 21 |
| 472 | 92.50 | wind | 7.0 | 720 | < th | dose independent | sin | 15 | NA |
| 496 | 92.52 | wind | 5.0 | 720 | > th | dose independent | rect. | 21 | 2 |
| 567 | 92.64 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 24 | 8 |
| 573 | 92.65 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 584 | 92.68 | wind | 7.0 | 720 | > th | dose independent | rect. | 19 | 6 |
| 624 | 92.74 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 22 | 7 |
| 631 | 92.76 | wind | 7.0 | 720 | < th | dose independent | rect. | 17 | 2 |
| 658 | 92.78 | radiation | 10.0 | 1440 | > th | dose independent | no | NA | NA |
| 748 | 92.80 | wind | 7.0 | 720 | > th | dose dependent | rect. | 19 | 6 |
| 755 | 92.82 | wind | 7.0 | 720 | < th | dose independent | rect. | 8 | 21 |
| 760 | 92.83 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 18 | 12 |
| 762 | 92.83 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 820 | 92.92 | wind | 7.0 | 4320 | > th | dose independent | rect. | 15 | 4 |
| 855 | 92.94 | wind | 9.0 | 720 | > th | dose dependent | rect. | 18 | 3 |
| 877 | 92.98 | wind | 7.0 | 4320 | < th | dose independent | rect. | 15 | 5 |
| 934 | 93.04 | wind | 7.0 | 720 | > th | dose dependent | rect. | 21 | 4 |
| 969 | 93.07 | wind | 3.0 | 720 | > th | dose dependent | rect. | 21 | 2 |