BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0111500 Os06g0111500|AK065920
(480 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G02360.2 | chr3:482498-483958 FORWARD LENGTH=487 863 0.0
AT1G64190.1 | chr1:23825549-23827012 REVERSE LENGTH=488 763 0.0
AT5G41670.1 | chr5:16665647-16667110 REVERSE LENGTH=488 763 0.0
AT4G29120.1 | chr4:14350861-14351865 FORWARD LENGTH=335 52 7e-07
>AT3G02360.2 | chr3:482498-483958 FORWARD LENGTH=487
Length = 486
Score = 863 bits (2230), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/486 (84%), Positives = 454/486 (93%), Gaps = 6/486 (1%)
Query: 1 MAV--TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVQRAKVEGNLPVYGFH 58
MAV TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETV+RAK EGNLP+YGFH
Sbjct: 1 MAVQPTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFH 60
Query: 59 DPASFVNSIQKPRVVIMLVKAGAPVDQTIATLAAHLEQGDCIIDGGNEWYENTERREKAM 118
DP SFV SIQKPRV+IMLVKAG+PVDQTI TL+A+LE+GDCI+DGGNEWYENTERREKA+
Sbjct: 61 DPESFVKSIQKPRVIIMLVKAGSPVDQTIKTLSAYLEKGDCIVDGGNEWYENTERREKAV 120
Query: 119 EERGLLYLGMGVSGGEEGARNGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYIGK 178
E G LYLGMGVSGGEEGARNGPS+MPGGS+EAYK IEDI+LKVAAQV DSGPCVTYIGK
Sbjct: 121 AENGFLYLGMGVSGGEEGARNGPSMMPGGSYEAYKNIEDIVLKVAAQVRDSGPCVTYIGK 180
Query: 179 GGSGNFVKMVHNGIEYGDMQLISEAYDVLKSVGKLTNSELQQVFSEWNKGELLSFLIEIT 238
GGSGNFVKMVHNGIEYGDMQLI+EAYDVLKSVGKL+N EL VFS+WNKGEL SFL+EIT
Sbjct: 181 GGSGNFVKMVHNGIEYGDMQLIAEAYDVLKSVGKLSNEELHSVFSDWNKGELESFLVEIT 240
Query: 239 ADIFSIKDDQGSGHLVDKVLDKTGMKGTGKWTVQQAAELSVAAPTIEASLDSRFLSGLKD 298
ADIF IKDD+G GHLVDKVLDKTGMKGTGKWTVQQAAELSV APTIE+SLD+RFLSGLKD
Sbjct: 241 ADIFGIKDDKGDGHLVDKVLDKTGMKGTGKWTVQQAAELSVPAPTIESSLDARFLSGLKD 300
Query: 299 ERVEAAKVFQ----GDFSSNLPVDKAQLIEDVRQALYASKICSYAQGMNIIKAKSMEKGW 354
ERV+AAKVF+ GD ++ VDK QL++DVR+ALYASKICSYAQGMN+I+AKS+EKGW
Sbjct: 301 ERVQAAKVFKAGGFGDILTDQKVDKKQLVDDVRKALYASKICSYAQGMNLIRAKSIEKGW 360
Query: 355 SLNLGELARIWKGGCIIRAIFLDRIKKAYDRNSDLANLLVDPEFAQEIMDRQAAWRRVVC 414
L LGELARIWKGGCIIRAIFLDRIK+AYDRN++LANLLVDPEFA+EI++RQ+AWRRVVC
Sbjct: 361 GLKLGELARIWKGGCIIRAIFLDRIKQAYDRNAELANLLVDPEFAKEIIERQSAWRRVVC 420
Query: 415 LAINNGVSTPGMSASLAYFDSYRRDRLPANLVQAQRDYFGAHTYERVDMPGSFHTEWFKI 474
LAIN+G+STPGMSASLAYFDSYRR+RLPANLVQAQRDYFGAHTYER D+ GSFHTEWFKI
Sbjct: 421 LAINSGISTPGMSASLAYFDSYRRERLPANLVQAQRDYFGAHTYERTDVEGSFHTEWFKI 480
Query: 475 ARAAKM 480
AR +K+
Sbjct: 481 ARQSKI 486
>AT1G64190.1 | chr1:23825549-23827012 REVERSE LENGTH=488
Length = 487
Score = 763 bits (1971), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/483 (76%), Positives = 419/483 (86%), Gaps = 11/483 (2%)
Query: 2 AVTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVQRAKVEGNLPVYGFHDPA 61
A++RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDET+ RA VEGNLPV G + P
Sbjct: 5 ALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETLDRAAVEGNLPVSGQYSPR 64
Query: 62 SFVNSIQKPRVVIMLVKAGAPVDQTIATLAAHLEQGDCIIDGGNEWYENTERREKAMEER 121
FV SIQ+PR +I+LVKAGAPVDQTI + ++E GDCIIDGGNEWY+NTERR E++
Sbjct: 65 DFVLSIQRPRSLIILVKAGAPVDQTIDAFSEYMEPGDCIIDGGNEWYQNTERRISEAEQK 124
Query: 122 GLLYLGMGVSGGEEGARNGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYIGKGGS 181
GLLYLGMGVSGGEEGARNGPSLMPGGSF+AY I+DIL KVAAQV D GPCVTYIG+GGS
Sbjct: 125 GLLYLGMGVSGGEEGARNGPSLMPGGSFQAYDNIKDILEKVAAQVED-GPCVTYIGEGGS 183
Query: 182 GNFVKMVHNGIEYGDMQLISEAYDVLKSVGKLTNSELQQVFSEWNKGELLSFLIEITADI 241
GNFVKMVHNGIEYGDMQLISEAYDVLK+VG L+N EL ++F+EWN GEL SFL+EIT+DI
Sbjct: 184 GNFVKMVHNGIEYGDMQLISEAYDVLKNVGGLSNEELAEIFTEWNSGELESFLVEITSDI 243
Query: 242 FSIKDDQGSGHLVDKVLDKTGMKGTGKWTVQQAAELSVAAPTIEASLDSRFLSGLKDERV 301
F +KD+ G G LVDK+LDKTGMKGTGKWTVQQAAELSVAAPTI ASLD R+LSGLKDER
Sbjct: 244 FRVKDEFGDGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKDERE 303
Query: 302 EAAKVFQ--------GDFSSNLPVDKAQLIEDVRQALYASKICSYAQGMNIIKAKSMEKG 353
AAKV + G SS +DK +L++DVRQALYASKICSYAQGMN+++AKS+EK
Sbjct: 304 NAAKVLREAGLKEEIGSASSG--IDKKRLVDDVRQALYASKICSYAQGMNLLRAKSLEKS 361
Query: 354 WSLNLGELARIWKGGCIIRAIFLDRIKKAYDRNSDLANLLVDPEFAQEIMDRQAAWRRVV 413
W+LN GELARIWKGGCIIRA+FLDRIKKAY RN DLA+L+VDPEFA+E++ RQAAWRRVV
Sbjct: 362 WNLNFGELARIWKGGCIIRAVFLDRIKKAYQRNPDLASLVVDPEFAKEMVQRQAAWRRVV 421
Query: 414 CLAINNGVSTPGMSASLAYFDSYRRDRLPANLVQAQRDYFGAHTYERVDMPGSFHTEWFK 473
LA++ G+STPGM ASLAYFD+YRR RLPANLVQAQRD FGAHTYER D PG++HTEW K
Sbjct: 422 GLAVSAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERTDRPGAYHTEWTK 481
Query: 474 IAR 476
+AR
Sbjct: 482 LAR 484
>AT5G41670.1 | chr5:16665647-16667110 REVERSE LENGTH=488
Length = 487
Score = 763 bits (1970), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/485 (76%), Positives = 424/485 (87%), Gaps = 7/485 (1%)
Query: 1 MAVTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVQRAKVEGNLPVYGFHDP 60
+A++RIGLAGLAVMGQNLALNIA+KGFPISVYNRTTSKVDET+ RA EG LPV G + P
Sbjct: 4 VALSRIGLAGLAVMGQNLALNIADKGFPISVYNRTTSKVDETLDRASNEGKLPVAGQYSP 63
Query: 61 ASFVNSIQKPRVVIMLVKAGAPVDQTIATLAAHLEQGDCIIDGGNEWYENTERREKAMEE 120
FV SIQ+PR VI+LVKAGAPVDQTI+ L+ ++E GDCIIDGGNEWY+NTERR E+
Sbjct: 64 RDFVLSIQRPRSVIILVKAGAPVDQTISALSEYMEPGDCIIDGGNEWYQNTERRIVEAEK 123
Query: 121 RGLLYLGMGVSGGEEGARNGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYIGKGG 180
+GLLYLGMGVSGGEEGARNGPSLMPGGSF AY ++DIL KVAAQV D GPCVTYIG+GG
Sbjct: 124 KGLLYLGMGVSGGEEGARNGPSLMPGGSFTAYNNVKDILEKVAAQVED-GPCVTYIGEGG 182
Query: 181 SGNFVKMVHNGIEYGDMQLISEAYDVLKSVGKLTNSELQQVFSEWNKGELLSFLIEITAD 240
SGNFVKMVHNGIEYGDMQLISEAYDVLK+VG L+N EL ++F+EWN+GEL SFL+EIT+D
Sbjct: 183 SGNFVKMVHNGIEYGDMQLISEAYDVLKNVGGLSNDELAEIFTEWNRGELESFLVEITSD 242
Query: 241 IFSIKDDQGSGHLVDKVLDKTGMKGTGKWTVQQAAELSVAAPTIEASLDSRFLSGLKDER 300
IF +KDD G G LVDK+LDKTGMKGTGKWTVQQAAELSVAAPTI ASLD R+LSGLKDER
Sbjct: 243 IFRVKDDYGDGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKDER 302
Query: 301 VEAAKVFQG-----DF-SSNLPVDKAQLIEDVRQALYASKICSYAQGMNIIKAKSMEKGW 354
AAKV + D S++ VDK +LI+DVRQALYASKICSYAQGMN+++AKS+EKGW
Sbjct: 303 ENAAKVLEEAGLKEDIGSASRGVDKKRLIDDVRQALYASKICSYAQGMNLLRAKSLEKGW 362
Query: 355 SLNLGELARIWKGGCIIRAIFLDRIKKAYDRNSDLANLLVDPEFAQEIMDRQAAWRRVVC 414
LNLGE+ARIWKGGCIIRA+FLDRIKKAY RN +LA+L+VDP+FA+E++ RQAAWRRVV
Sbjct: 363 DLNLGEMARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPDFAKEMVQRQAAWRRVVG 422
Query: 415 LAINNGVSTPGMSASLAYFDSYRRDRLPANLVQAQRDYFGAHTYERVDMPGSFHTEWFKI 474
LAI+ G+STPGM ASLAYFD+YRR RLPANLVQAQRD FGAHTYER D PG++HTEW K+
Sbjct: 423 LAISAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERTDRPGAYHTEWTKL 482
Query: 475 ARAAK 479
AR ++
Sbjct: 483 ARKSQ 487
>AT4G29120.1 | chr4:14350861-14351865 FORWARD LENGTH=335
Length = 334
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 81/193 (41%), Gaps = 27/193 (13%)
Query: 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVQRAKVEGNLPVYGFHDPASF 63
T+IG G VMG+++ ++ + G+ ++V+NRT SK + + P
Sbjct: 38 TKIGWIGTGVMGRSMCGHLIKAGYTVTVFNRTISKAQTLIDMGANVADSP---------- 87
Query: 64 VNSIQKPRVVIMLVKAGAPVDQTIATL------AAHLEQGDCIIDGGNEWYENTERREKA 117
NS+ + V+ + G P D L + L QG ++D E KA
Sbjct: 88 -NSVAEQSDVVFTI-VGYPSDVRHVLLDPKSGALSGLRQGGVLVDMTTSEPSLAEEIAKA 145
Query: 118 MEERGLLYLGMGVSGGEEGARNGP-SLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYI 176
+ + VSGG+ GA+NG S+ GG K + D L + + V ++
Sbjct: 146 ASFKNCFSIDAPVSGGDLGAKNGKLSIFAGGDETTVKRL-DPLFSLMGK-------VNFM 197
Query: 177 GKGGSGNFVKMVH 189
G G G F K+ +
Sbjct: 198 GTSGKGQFAKLAN 210
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.135 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,237,772
Number of extensions: 441132
Number of successful extensions: 1024
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1017
Number of HSP's successfully gapped: 5
Length of query: 480
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 378
Effective length of database: 8,310,137
Effective search space: 3141231786
Effective search space used: 3141231786
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 114 (48.5 bits)