Os06g0107100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF819 family protein.
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Os06g0107100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF819 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 161.38 | 0.597 | 11.3 | -2.86 | 2.06 | -1.91 | 0.108 | -0.841 | -1.47 | 17.7 | 4.835 | 1432 | -- | -- |
| 162.16 | 0.593 | 11.3 | -2.93 | 2.09 | -1.92 | 0.0571 | -- | -1.5 | 17.8 | 4.944 | 1442 | -- | -- |
| 161.12 | 0.591 | 11.3 | -2.86 | 2.06 | -1.95 | -- | -0.92 | -1.48 | 17.8 | 4.643 | 1440 | -- | -- |
| 161.98 | 0.593 | 11.3 | -2.95 | 2.05 | -1.96 | -- | -- | -1.49 | 18 | 5.012 | 1455 | -- | -- |
| 172.67 | 0.612 | 11.3 | -2.99 | -- | -3.48 | -- | 0.778 | -1.53 | -- | 4.4 | 2160 | -- | -- |
| 229.19 | 0.71 | 11.3 | -2.7 | 2.02 | -- | -0.0194 | -- | -1.16 | 17.8 | -- | -- | -- | -- |
| 229.19 | 0.709 | 11.3 | -2.7 | 2.01 | -- | -- | -- | -1.16 | 17.8 | -- | -- | -- | -- |
| 171.02 | 0.609 | 11.3 | -2.94 | -- | -3.55 | -- | -- | -1.52 | -- | 4.297 | 2164 | -- | -- |
| 361.43 | 0.885 | 11.3 | -- | 1.99 | -1.77 | -- | -- | -1.14 | 18.3 | 9.907 | 3031 | -- | -- |
| 439.7 | 0.98 | 11.2 | -2.76 | -- | -- | -- | -- | -1.21 | -- | -- | -- | -- | -- |
| 421.13 | 0.96 | 11.2 | -- | 2.06 | -- | -- | -- | -0.862 | 17.8 | -- | -- | -- | -- |
| 375.16 | 0.902 | 11.3 | -- | -- | -3.64 | -- | -- | -1.32 | -- | 10 | 2147 | -- | -- |
| 640.7 | 1.18 | 11.2 | -- | -- | -- | -- | -- | -0.903 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 164.03 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 16 |
| 4 | 164.13 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 12 |
| 8 | 164.17 | radiation | 10 | 1440 | < th | dose dependent | sin | 20 | NA |
| 34 | 166.25 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 11 |
| 37 | 166.33 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 5 |
| 47 | 166.57 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 17 |
| 49 | 166.85 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 19 |
| 107 | 167.99 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 10 |
| 109 | 168.29 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 10 |
| 112 | 168.34 | humidity | 80 | 1440 | > th | dose independent | rect. | 8 | 13 |
| 117 | 168.55 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 118 | 168.55 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 21 |
| 136 | 168.83 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 10 |
| 139 | 168.84 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 15 |
| 144 | 168.90 | radiation | 1 | 1440 | < th | dose independent | sin | 22 | NA |
| 158 | 169.18 | humidity | 80 | 1440 | < th | dose independent | rect. | 9 | 12 |
| 171 | 169.40 | humidity | 80 | 1440 | > th | dose independent | sin | 21 | NA |
| 184 | 169.59 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 21 |
| 189 | 169.62 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 216 | 169.81 | radiation | 1 | 1440 | > th | dose independent | sin | 22 | NA |
| 243 | 170.03 | temperature | 25 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 245 | 170.05 | temperature | 25 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 259 | 170.24 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 260 | 170.24 | humidity | 70 | 1440 | > th | dose dependent | sin | 19 | NA |
| 265 | 170.26 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 15 |
| 269 | 170.27 | temperature | 30 | 14400 | < th | dose independent | rect. | 18 | 16 |
| 273 | 170.30 | temperature | 30 | 14400 | > th | dose independent | rect. | 18 | 16 |
| 289 | 170.41 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 9 |
| 337 | 170.56 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 10 |
| 395 | 170.72 | temperature | 25 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 422 | 170.88 | temperature | 30 | 14400 | < th | dose independent | rect. | 5 | 5 |
| 467 | 171.03 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 482 | 171.05 | humidity | 80 | 1440 | < th | dose independent | sin | 21 | NA |
| 582 | 171.26 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 23 |
| 591 | 171.29 | radiation | 10 | 1440 | < th | dose dependent | no | NA | NA |
| 593 | 171.29 | radiation | 10 | 1440 | < th | dose dependent | rect. | 21 | 23 |
| 625 | 171.39 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 2 |
| 673 | 171.51 | temperature | 25 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 737 | 171.83 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 21 |
| 765 | 171.96 | temperature | 30 | 14400 | > th | dose dependent | rect. | 18 | 16 |