BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0107100 Os06g0107100|AK066804
         (395 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G52540.1  | chr5:21321672-21323702 REVERSE LENGTH=462          315   3e-86
AT5G24000.1  | chr5:8110380-8112692 REVERSE LENGTH=444            304   5e-83

>AT5G52540.1 | chr5:21321672-21323702 REVERSE LENGTH=462
          Length = 461

 Score =  315 bits (807), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 187/372 (50%), Positives = 226/372 (60%), Gaps = 51/372 (13%)

Query: 69  DHWGNWAFLLSAAAFGTWSEESTSWGAALSGSLVST------------------------ 104
           D WG W  L +  A G WSE+ T  GAA+SG+LVST                        
Sbjct: 89  DEWGTWTALFATGALGLWSEK-TKVGAAMSGALVSTLVGLAASNLGIISSQAPAFAVVLN 147

Query: 105 ----------------------TGDLLKAFLIGSVATTIGTTIAFLLVPMKSLGQDSWKI 142
                                 TG LL AFLIGSVATT+GT +A+ LVPMKSLG DSWKI
Sbjct: 148 FLLPLAVPLLLFRADLRRVVQSTGKLLLAFLIGSVATTVGTALAYYLVPMKSLGPDSWKI 207

Query: 143 AAALMGSYIGGAVNYVAISEALGVSPSVLAAGVAADNIISALYFMTLFSLAAKIPAE--- 199
           AAALMG +IGGAVNYVAIS ALGV+PSVLAAG+AADN+I A+YF TLF+L +KIPAE   
Sbjct: 208 AAALMGRHIGGAVNYVAISNALGVTPSVLAAGLAADNVICAVYFTTLFALGSKIPAEAVP 267

Query: 200 -PKTAQXXXXXXXXXXXRRMSVLHGGAAVALSFVICKAGSAISSQLGIQGGXXXXXXXXX 258
            P T              ++ VL     +A+S  ICKAG+ ++   GI GG         
Sbjct: 268 PPTTIVDAETNEASETKNKIPVLLIATGIAVSLAICKAGALLTKYFGISGGSLPAITAVV 327

Query: 259 XXXXXXFPRLLGKLAPSGETIALILMQVFFTVVGANGNLVDAVTKAPSVFAFALVQVTIH 318
                 FP   G+LAPSGE +ALILMQVFFTVVGA+GN+   +  APS+F FALVQ+  H
Sbjct: 328 VILATVFPSQFGRLAPSGEAMALILMQVFFTVVGASGNIWSVINTAPSIFLFALVQIGTH 387

Query: 319 LGIVLAAGKLMGFERKPLLIASNANVGGPXXXXXXXXXKGWSSLIVPGILVGMFGISIAT 378
           L ++L  GKL+  E + LL+ASNANVGGP         KGW+SLIVPGIL G+FGI+IAT
Sbjct: 388 LAVILGIGKLLNIELRLLLLASNANVGGPTTAAGMATAKGWNSLIVPGILAGIFGIAIAT 447

Query: 379 FVGIGFGMFVLR 390
           F+GI FG+ VL+
Sbjct: 448 FIGIAFGVKVLK 459



>AT5G24000.1 | chr5:8110380-8112692 REVERSE LENGTH=444
          Length = 443

 Score =  304 bits (779), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 175/373 (46%), Positives = 226/373 (60%), Gaps = 49/373 (13%)

Query: 68  GDHWGNWAFLLSAAAFGTWSEESTSWGAALSGSLVST----------------------- 104
            DHW  WA L +A AFG WSE+ T  G+ +SG+L ST                       
Sbjct: 72  DDHWSQWAALFAAGAFGVWSEK-TKIGSMVSGALTSTLLGLAASNLRLIPFETPSYGFFM 130

Query: 105 -----------------------TGDLLKAFLIGSVATTIGTTIAFLLVPMKSLGQDSWK 141
                                  TG LL AFLIGSVAT +GT +AF+LVPM+SLG D+WK
Sbjct: 131 EFLLPHTIPLLLFRADLRRIIRSTGSLLLAFLIGSVATIVGTVVAFMLVPMRSLGPDNWK 190

Query: 142 IAAALMGSYIGGAVNYVAISEALGVSPSVLAAGVAADNIISALYFMTLFSLAAKIPAEPK 201
           IAAALMGSYIGG++N+VAISEAL +SPSV+AAGVA DN+I AL+FM LF+LA+KIP E  
Sbjct: 191 IAAALMGSYIGGSLNFVAISEALQISPSVIAAGVAVDNVICALHFMVLFALASKIPPETA 250

Query: 202 TAQX--XXXXXXXXXXRRMSVLHGGAAVALSFVICKAGSAISSQLGIQGGXXXXXXXXXX 259
           +A               +  V+    A+++SF+ICKA   +++   IQG           
Sbjct: 251 SASSPDADMTKDDKLEDKNRVVSTSIALSVSFLICKAAITLTTLFKIQGVMLPAVTAITI 310

Query: 260 XXXXXFPRLLGKLAPSGETIALILMQVFFTVVGANGNLVDAVTKAPSVFAFALVQVTIHL 319
                FP     LAPS ETI+LILMQVFFT++GA G++ + +  APS+F FA +QV +HL
Sbjct: 311 VLATSFPDFFNSLAPSAETISLILMQVFFTILGATGSVWNVINTAPSIFLFAAIQVMVHL 370

Query: 320 GIVLAAGKLMGFERKPLLIASNANVGGPXXXXXXXXXKGWSSLIVPGILVGMFGISIATF 379
            + L  GKL   + K LL+ASNAN+GGP         KGW+SL+VPGIL G+FG+SIATF
Sbjct: 371 AVTLVLGKLFCIDMKLLLLASNANIGGPTTACAMATAKGWTSLVVPGILSGVFGVSIATF 430

Query: 380 VGIGFGMFVLRRI 392
           +GIG G+FVL+R+
Sbjct: 431 LGIGCGVFVLKRL 443



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.137    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,207,189
Number of extensions: 199227
Number of successful extensions: 436
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 432
Number of HSP's successfully gapped: 3
Length of query: 395
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 294
Effective length of database: 8,337,553
Effective search space: 2451240582
Effective search space used: 2451240582
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 113 (48.1 bits)