Os06g0106100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cwf15/Cwc15 cell cycle control protein family protein.
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Os06g0106100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cwf15/Cwc15 cell cycle control protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 12.97 | 0.169 | 11.6 | -0.419 | 0.101 | -0.363 | -0.18 | 0.398 | -0.0517 | 14.9 | 10.05 | 228 | -- | -- |
| 13.14 | 0.169 | 11.6 | -0.445 | 0.12 | -0.373 | 0.127 | -- | -0.0615 | 13.8 | 10.03 | 194 | -- | -- |
| 12.95 | 0.168 | 11.6 | -0.43 | 0.0927 | -0.355 | -- | 0.281 | -0.0597 | 13.9 | 10.06 | 199 | -- | -- |
| 13.23 | 0.169 | 11.6 | -0.437 | 0.101 | -0.361 | -- | -- | -0.062 | 14.2 | 10.07 | 199 | -- | -- |
| 13.08 | 0.168 | 11.6 | -0.459 | -- | -0.289 | -- | 0.285 | -0.0654 | -- | 11.2 | 179 | -- | -- |
| 15.78 | 0.186 | 11.6 | -0.492 | 0.241 | -- | -0.0733 | -- | -0.0921 | 1.48 | -- | -- | -- | -- |
| 15.8 | 0.186 | 11.6 | -0.489 | 0.241 | -- | -- | -- | -0.0917 | 1.48 | -- | -- | -- | -- |
| 13.37 | 0.17 | 11.6 | -0.455 | -- | -0.283 | -- | -- | -0.0648 | -- | 11.3 | 169 | -- | -- |
| 18.34 | 0.199 | 11.6 | -- | 0.0939 | -0.361 | -- | -- | -0.0522 | 14.9 | 10.22 | 207 | -- | -- |
| 19.37 | 0.206 | 11.6 | -0.48 | -- | -- | -- | -- | -0.0865 | -- | -- | -- | -- | -- |
| 22.11 | 0.22 | 11.6 | -- | 0.232 | -- | -- | -- | -0.0372 | 1.41 | -- | -- | -- | -- |
| 18.64 | 0.201 | 11.6 | -- | -- | -0.297 | -- | -- | -0.0176 | -- | 11.33 | 163 | -- | -- |
| 25.44 | 0.235 | 11.6 | -- | -- | -- | -- | -- | -0.0333 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 13.02 | radiation | 10 | 270 | > th | dose independent | rect. | 14 | 23 |
| 2 | 13.04 | radiation | 10 | 270 | > th | dose independent | sin | 3 | NA |
| 4 | 13.05 | radiation | 10 | 270 | < th | dose dependent | sin | 1 | NA |
| 5 | 13.09 | radiation | 10 | 270 | > th | dose independent | rect. | 17 | 23 |
| 8 | 13.11 | radiation | 10 | 270 | > th | dose independent | rect. | 6 | 10 |
| 22 | 13.13 | radiation | 10 | 270 | < th | dose dependent | rect. | 4 | 14 |
| 33 | 13.22 | humidity | 60 | 10 | > th | dose dependent | rect. | 6 | 15 |
| 36 | 13.24 | radiation | 10 | 270 | < th | dose independent | rect. | 14 | 20 |
| 52 | 13.26 | radiation | 20 | 270 | < th | dose dependent | rect. | 13 | 21 |
| 56 | 13.28 | radiation | 10 | 270 | > th | dose independent | no | NA | NA |
| 136 | 13.29 | radiation | 10 | 270 | < th | dose independent | rect. | 4 | 14 |
| 208 | 13.42 | humidity | 80 | 90 | > th | dose independent | rect. | 5 | 15 |
| 209 | 13.42 | radiation | 20 | 270 | < th | dose dependent | no | NA | NA |
| 214 | 13.43 | radiation | 10 | 270 | < th | dose independent | sin | 1 | NA |
| 227 | 13.44 | radiation | 20 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 228 | 13.45 | humidity | 80 | 90 | < th | dose independent | rect. | 8 | 10 |
| 235 | 13.45 | radiation | 20 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 237 | 13.45 | radiation | 20 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 250 | 13.47 | humidity | 80 | 10 | > th | dose independent | rect. | 6 | 15 |
| 266 | 13.48 | radiation | 20 | 90 | < th | dose dependent | rect. | 5 | 8 |
| 284 | 13.50 | radiation | 20 | 270 | < th | dose dependent | rect. | 2 | 23 |
| 285 | 13.51 | humidity | 80 | 90 | > th | dose independent | sin | 0 | NA |
| 291 | 13.51 | humidity | 60 | 10 | > th | dose dependent | sin | 23 | NA |
| 434 | 13.55 | humidity | 70 | 90 | > th | dose dependent | sin | 23 | NA |
| 445 | 13.56 | humidity | 80 | 10 | > th | dose independent | sin | 23 | NA |
| 447 | 13.56 | humidity | 80 | 90 | < th | dose independent | sin | 0 | NA |
| 467 | 13.57 | radiation | 10 | 270 | < th | dose independent | rect. | 2 | 23 |
| 504 | 13.59 | humidity | 80 | 10 | > th | dose independent | rect. | 6 | 12 |
| 514 | 13.60 | humidity | 80 | 10 | < th | dose independent | sin | 23 | NA |
| 521 | 13.60 | radiation | 10 | 270 | < th | dose independent | rect. | 8 | 23 |
| 533 | 13.61 | radiation | 10 | 270 | < th | dose independent | no | NA | NA |
| 569 | 13.63 | radiation | 10 | 270 | < th | dose independent | rect. | 22 | 23 |
| 613 | 13.66 | humidity | 80 | 10 | < th | dose independent | rect. | 8 | 10 |
| 620 | 13.66 | humidity | 90 | 10 | < th | dose dependent | rect. | 8 | 11 |
| 627 | 13.67 | radiation | 10 | 270 | < th | dose independent | rect. | 3 | 10 |
| 643 | 13.68 | radiation | 10 | 270 | < th | dose independent | rect. | 3 | 7 |
| 657 | 13.68 | humidity | 90 | 10 | < th | dose dependent | rect. | 8 | 16 |
| 660 | 13.68 | humidity | 90 | 10 | < th | dose dependent | rect. | 8 | 19 |
| 899 | 13.74 | radiation | 10 | 10 | < th | dose independent | rect. | 6 | 16 |
| 903 | 13.74 | humidity | 90 | 10 | < th | dose dependent | sin | 23 | NA |
| 939 | 13.76 | radiation | 10 | 90 | < th | dose independent | rect. | 6 | 4 |
| 968 | 13.77 | humidity | 80 | 10 | < th | dose independent | rect. | 8 | 8 |