BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0106100 Os06g0106100|AK111784
         (230 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G13200.1  | chr3:4242239-4243976 FORWARD LENGTH=231            263   6e-71

>AT3G13200.1 | chr3:4242239-4243976 FORWARD LENGTH=231
          Length = 230

 Score =  263 bits (672), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 137/232 (59%), Positives = 156/232 (67%), Gaps = 4/232 (1%)

Query: 1   MTTAARPTWAPAKGGNEQGGTRIFGPSQKYSSRDLAAHTTLKPRKEGQHTQEELQKXXXX 60
           MTTAARPTWAPAKGGNEQGG RIFGPSQKYSSRD+AAHTTLKPR+EGQHTQEELQK    
Sbjct: 1   MTTAARPTWAPAKGGNEQGGARIFGPSQKYSSRDVAAHTTLKPRREGQHTQEELQKINLR 60

Query: 61  XXXXXXXXKHYSSKDKSYAEERDRRKSTSLLLEGSRREAEDKIVPR--EIXXXXXXXXXX 118
                   +H+SSKDKSY ++RDRR+ + LLLE S+R+ E++I+PR  +           
Sbjct: 61  DELEERERRHFSSKDKSYNDDRDRRRGSQLLLEDSKRDPEERIIPRSVDADDSDVDIKSD 120

Query: 119 XXXXXXXXXXXXXXTEALMAELERIKKERAEENXXXXXXXXXXXXXXXXXXXXXGNPLIN 178
                         TEALMAEL++IKKER EE                      GNPL  
Sbjct: 121 DDSDDESDDDDEDDTEALMAELDQIKKERVEERLRKEKEQQMEELNAKEEELLKGNPL-- 178

Query: 179 INNAGSFNVKRRWDDDVVFKNQARGETKTPKRFINDTIRSDFHRKFLQRYMK 230
           +N   SF+VKRRWDDDVVFKNQARGE K PKRFINDTIR+DFHRKFL RYMK
Sbjct: 179 LNTPTSFSVKRRWDDDVVFKNQARGEMKAPKRFINDTIRNDFHRKFLHRYMK 230



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.312    0.128    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,735,901
Number of extensions: 118722
Number of successful extensions: 192
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 135
Effective length of database: 8,502,049
Effective search space: 1147776615
Effective search space used: 1147776615
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 110 (47.0 bits)