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Os06g0105900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.7 (0.0148) R2 : 0.118
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.244 (0.0313) R2dN8 : 0.153 R2N8 : 0.118
σ : 0.28
deviance : 35.9
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
18.19 0.2 11.7 1.1 0.0366 -0.513 0.277 2.03 0.484 8.95 21.84 374 -- --
20.64 0.212 11.7 0.71 0.0671 -0.326 -0.101 -- 0.356 6.97 23.1 342 -- --
18.39 0.2 11.7 1.08 0.0501 -0.518 -- 1.93 0.478 10.3 21.86 325 -- --
20.65 0.212 11.7 0.712 0.0639 -0.347 -- -- 0.359 8.65 23 305 -- --
18.5 0.2 11.7 1.1 -- -0.528 -- 1.95 0.482 -- 21.9 369 -- --
22.79 0.224 11.7 0.641 0.199 -- -0.159 -- 0.311 5.9 -- -- -- --
22.84 0.224 11.7 0.64 0.199 -- -- -- 0.312 6.19 -- -- -- --
20.8 0.212 11.7 0.721 -- -0.381 -- -- 0.368 -- 23.12 371 -- --
33.3 0.27 11.7 -- 0.178 -0.142 -- -- 0.258 6.96 23 305 -- --
24.9 0.233 11.7 0.646 -- -- -- -- 0.316 -- -- -- -- --
33.65 0.271 11.7 -- 0.208 -- -- -- 0.24 6.03 -- -- -- --
33.72 0.27 11.7 -- -- -0.273 -- -- 0.258 -- 25 348 -- --
35.9 0.28 11.7 -- -- -- -- -- 0.244 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 17.75 precipitation 0.1 43200 > th dose dependent rect. 19 1
2 17.86 precipitation 0.1 43200 > th dose independent rect. 19 1
3 17.87 precipitation 0.1 43200 < th dose independent rect. 19 1
4 17.87 precipitation 0.1 43200 < th dose dependent rect. 19 1
5 17.90 humidity 90.0 43200 < th dose independent rect. 22 1
6 17.95 radiation 1.0 14400 > th dose independent rect. 18 12
7 17.95 wind 5.0 43200 < th dose dependent rect. 11 2
8 17.99 radiation 1.0 14400 > th dose independent rect. 18 1
9 17.99 temperature 25.0 1440 < th dose independent rect. 20 2
20 18.00 temperature 20.0 1440 > th dose dependent rect. 20 1
23 18.02 temperature 25.0 1440 > th dose independent rect. 19 3
25 18.03 humidity 80.0 43200 > th dose dependent rect. 18 5
27 18.05 temperature 25.0 1440 > th dose independent rect. 20 1
32 18.07 radiation 1.0 14400 > th dose independent rect. 5 1
34 18.08 humidity 90.0 43200 > th dose independent rect. 22 1
37 18.10 radiation 1.0 14400 < th dose independent rect. 5 1
43 18.12 radiation 1.0 14400 < th dose independent rect. 18 12
44 18.14 humidity 80.0 43200 < th dose independent rect. 3 5
47 18.15 wind 3.0 43200 > th dose independent rect. 12 1
60 18.19 temperature 20.0 1440 > th dose dependent rect. 19 10
62 18.20 wind 9.0 43200 > th dose independent rect. 19 2
66 18.20 temperature 20.0 1440 > th dose dependent rect. 19 8
70 18.21 wind 9.0 43200 > th dose dependent rect. 19 2
87 18.23 radiation 1.0 14400 < th dose independent rect. 18 1
89 18.23 humidity 80.0 43200 > th dose independent rect. 4 3
115 18.26 wind 1.0 43200 > th dose independent rect. 19 1
122 18.27 humidity 80.0 43200 < th dose independent rect. 23 9
124 18.27 humidity 90.0 14400 > th dose dependent rect. 21 5
138 18.29 temperature 20.0 1440 > th dose dependent sin 12 NA
141 18.30 wind 9.0 43200 < th dose independent rect. 19 2
146 18.30 wind 1.0 43200 > th dose dependent rect. 5 11
162 18.32 wind 3.0 43200 < th dose independent rect. 8 6
163 18.32 humidity 80.0 43200 > th dose independent rect. 2 6
164 18.32 humidity 80.0 43200 > th dose independent rect. 24 8
186 18.34 humidity 80.0 43200 > th dose independent rect. 24 1
187 18.34 wind 3.0 43200 < th dose independent rect. 11 2
194 18.34 wind 9.0 43200 < th dose dependent rect. 6 10
197 18.34 humidity 80.0 43200 > th dose dependent rect. 5 20
202 18.35 wind 1.0 43200 > th dose dependent rect. 12 1
210 18.36 humidity 80.0 14400 > th dose independent rect. 17 1
212 18.36 wind 3.0 43200 > th dose independent rect. 8 6
254 18.38 wind 1.0 43200 > th dose dependent sin 1 NA
265 18.39 atmosphere 995.0 43200 < th dose independent rect. 11 4
274 18.39 wind 3.0 43200 < th dose dependent rect. 8 1
275 18.39 humidity 90.0 43200 > th dose dependent rect. 14 1
291 18.40 humidity 90.0 43200 < th dose independent rect. 5 22
305 18.41 atmosphere 995.0 43200 > th dose independent rect. 8 7
309 18.41 wind 9.0 43200 < th dose dependent sin 1 NA
311 18.41 humidity 90.0 43200 > th dose dependent rect. 5 2
312 18.41 wind 1.0 43200 > th dose dependent rect. 11 3
354 18.43 atmosphere 995.0 43200 < th dose dependent rect. 13 3
355 18.43 wind 3.0 43200 < th dose dependent rect. 7 5
356 18.43 radiation 1.0 4320 < th dose dependent rect. 18 6
368 18.43 wind 3.0 43200 > th dose dependent rect. 5 16
383 18.44 humidity 90.0 43200 < th dose independent rect. 18 20
384 18.44 humidity 90.0 43200 < th dose independent rect. 15 21
387 18.44 humidity 90.0 43200 < th dose independent rect. 11 23
388 18.44 humidity 90.0 43200 < th dose independent rect. 13 23
391 18.44 radiation 1.0 4320 < th dose dependent rect. 18 4
420 18.45 radiation 1.0 4320 < th dose dependent rect. 18 1
435 18.45 wind 1.0 43200 > th dose dependent rect. 3 18
439 18.46 humidity 90.0 43200 < th dose independent no NA NA
440 18.46 humidity 80.0 43200 > th dose independent rect. 3 1
448 18.46 humidity 90.0 43200 > th dose independent rect. 18 19
457 18.46 humidity 90.0 43200 > th dose independent rect. 5 23
472 18.46 temperature 20.0 270 > th dose dependent rect. 11 23
474 18.47 atmosphere 995.0 43200 > th dose independent rect. 12 1
480 18.47 radiation 1.0 14400 < th dose independent rect. 24 6
509 18.47 humidity 90.0 43200 > th dose independent rect. 11 23
511 18.47 humidity 90.0 43200 < th dose independent rect. 9 23
513 18.47 humidity 90.0 43200 < th dose independent rect. 22 23
517 18.47 radiation 1.0 14400 < th dose dependent rect. 5 1
530 18.47 wind 9.0 43200 < th dose dependent rect. 3 18
538 18.48 humidity 80.0 14400 > th dose independent rect. 14 5
564 18.48 humidity 80.0 43200 > th dose dependent sin 18 NA
567 18.48 humidity 90.0 43200 > th dose dependent rect. 4 4
588 18.48 temperature 20.0 720 > th dose dependent rect. 20 17
614 18.49 humidity 90.0 43200 > th dose independent rect. 3 23
641 18.50 humidity 90.0 43200 > th dose independent no NA NA
642 18.50 humidity 90.0 43200 < th dose independent sin 17 NA
652 18.50 wind 3.0 43200 > th dose independent rect. 3 14
670 18.50 humidity 90.0 43200 > th dose independent rect. 9 23
675 18.50 humidity 90.0 43200 > th dose independent rect. 22 23
679 18.50 radiation 1.0 43200 < th dose dependent rect. 24 3
681 18.50 radiation 1.0 43200 < th dose dependent rect. 20 7
720 18.51 humidity 90.0 43200 > th dose independent rect. 1 23
747 18.52 humidity 80.0 43200 < th dose independent rect. 3 1
755 18.52 humidity 90.0 43200 > th dose independent rect. 22 15
791 18.52 wind 1.0 43200 > th dose dependent rect. 24 17
796 18.53 humidity 90.0 43200 > th dose independent sin 5 NA
841 18.53 wind 7.0 43200 < th dose dependent rect. 24 17
866 18.54 humidity 90.0 43200 < th dose independent rect. 9 18
881 18.54 radiation 1.0 43200 < th dose dependent rect. 20 5
902 18.55 humidity 80.0 14400 < th dose independent rect. 16 2
924 18.55 radiation 1.0 43200 < th dose dependent rect. 22 5
940 18.55 humidity 80.0 43200 < th dose dependent rect. 22 11
961 18.56 humidity 90.0 43200 < th dose independent sin 4 NA
975 18.56 wind 3.0 43200 < th dose independent rect. 3 13
992 18.56 temperature 25.0 1440 > th dose dependent rect. 16 2
995 18.56 wind 9.0 43200 > th dose dependent rect. 19 6
997 18.56 temperature 20.0 1440 > th dose dependent rect. 1 7