BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0105900 Os06g0105900|AK072638
         (1018 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G01290.1  | chr4:538213-543282 REVERSE LENGTH=992              221   2e-57

>AT4G01290.1 | chr4:538213-543282 REVERSE LENGTH=992
          Length = 991

 Score =  221 bits (563), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 298/1076 (27%), Positives = 436/1076 (40%), Gaps = 184/1076 (17%)

Query: 16   RISYSRDFMISVGETDRCKKLPQ---GFDASLLSDLQEMS------AGVLD----RNKGY 62
            RI+Y+R F+IS+ E D CKKLP     FD +LL D ++ S      +G       R   Y
Sbjct: 27   RITYTRKFLISLSEKDVCKKLPNLPGEFDEALLLDFEDPSPERARISGDFSSHGFRRNDY 86

Query: 63   YTTPLXXXXXXXXXXXXXXXXXXXXRWETXXXXXXXXXXXXXXXXXXMQ-DRRNGNQYRR 121
             ++P                     RWE                    +  RR+G   RR
Sbjct: 87   SSSP------PTRGELGTNSRGTHGRWEGRSGGWNDKDSDSQSDRDSGEPGRRSGMPSRR 140

Query: 122  NWQNQEHDGLLGSGVLPRPPGYG-GQVASKDRGN-TYQPNRTSERYQXXXXXXXX--XXX 177
            +WQ  EHDGLLG G  P+P G+G G  A + + N ++Q +RT+E Y              
Sbjct: 141  SWQAPEHDGLLGKGSFPKPSGFGAGTSAPRPQSNDSHQLSRTNEPYHPPRPYKAPPFTRR 200

Query: 178  XDIDAMNDETFGSSEFSNXXXXXXXXXXXXSFEMMRKEQHKALQEK-KNGPEIEKENSGH 236
               D+ NDETFGSS+ ++            SFE++RKE  KA QE+ K+ P++ K +   
Sbjct: 201  DARDSFNDETFGSSDSTSEDRAEEERKRRASFELLRKEHQKAFQERQKSNPDLRKND--F 258

Query: 237  DIISLLQTPSERTATTAKSEKPDGSAISSAYQEDTTKTSSVLSASTA-RPLVPPGFSNAF 295
            D   LL    +     ++S++     ++ A     +  +S+ S S A RPLVPPGF++  
Sbjct: 259  DFTELLGESKDDKGRPSRSDE-----VNHAPTIPGSSNTSLPSQSNAPRPLVPPGFASTI 313

Query: 296  VEKKL--QPQSSNISLEPKVIDATSEGNILATAQFGG-------------LVEGNQSASE 340
            +EKK   +PQ+     E   +++     +  T+   G             L+EG      
Sbjct: 314  LEKKQGEKPQTETSQYERSPLNSKGINVVNGTSVNNGGKPLGIKIGSSEMLIEGEDV--R 371

Query: 341  ITASKNKEKGIPDNIASVGKQHTLPSGGVTYSAEFASSILKGSGDWEGDAMDKYSIENEG 400
            ++++   E+ +  NI+S+        G  T +     S  K S       +  Y I++E 
Sbjct: 372  VSSTDANERAV--NISSL-------LGISTDTVNKDKSFEKLSSISTPTEIQGYPIKSEK 422

Query: 401  KSKNIGSVRK-DHS--ISILEQFFGSALSKGGTDLPPYVENQQMKNDDDVIVSSLPE--- 454
             +  +G  +  +HS   SIL++ F +A++    D      N   KN + V     P+   
Sbjct: 423  ATMTLGKKKSLEHSDGPSILDKIFNTAINLNSGD----SSNMNKKNVEKVEEIRSPQTIN 478

Query: 455  -SSKFAHWFHDEDSKPAEDLSSN----GLLSMIVKNEKPGQESIAHGPPLSDGAVQNLLP 509
             SSKFAH F +ED+KP E L S+    GLLS++   +K                   L  
Sbjct: 479  KSSKFAHLFLEEDNKPVEVLPSSEPPRGLLSLLQGADK-------------------LQT 519

Query: 510  ISPTHKLDVASTHPLFTPAAPAVGMLEQHNHADIDPA-PIMMTCEDLEQAMLAQVATSSN 568
                   D+++  P    A      L   +      A P ++TCEDLEQ++L++V  S +
Sbjct: 520  FDTKANPDLSTDFPFQGHATKRTDQLSSTSTTKSVTAVPPVLTCEDLEQSILSEVGDSYH 579

Query: 569  SNQKNVVQEHQLVVDEPIATQKVAVDNHASQHLLSLLTKSTDNKGSSSFGLHIGSSDRSH 628
                 V Q+  +   +    +K +VD+ ASQHLLSLL +S+D K S    L   +  R  
Sbjct: 580  PPPPPVDQDTSVPSVKMTKQRKTSVDDQASQHLLSLLQRSSDPK-SQDTQLLSATERRPP 638

Query: 629  NSDVTSNGGVSGIAPVNKAETAPTSEKNLTLEALFGAAFMNELQSKDAPVSIRGSATSGP 688
               + +      +      E  P   K+LTLE LFG+AFMNELQS   PVS R   +  P
Sbjct: 639  PPSMKTTTPPPSVKSTTAGEADPG--KSLTLENLFGSAFMNELQSIGEPVSGRAMVSDAP 696

Query: 689  NYEFAETGKTSIASSHEGYYPGEQVLPFGTIKDGVAPKESGTGNRNLALSGPSQGSASLD 748
                         S      P                             GP  G     
Sbjct: 697  GVPLRSERSIGELSQRNQIRP----------------------------DGPPGGV---- 724

Query: 749  KKSLEIQLPEEDNLFTVNDSLDGQKPDIFPSVRSSRVEGLLPEKAVDDLNYRLQSLVPG- 807
                 + LPE+ NL  V    +  K   FP   +       PE A  +++ +L +L  G 
Sbjct: 725  -----LALPEDGNLLAVGGHANPSKYMSFPGSHNQE-----PEVAF-NISDKLAALNSGP 773

Query: 808  DSEHVQVLGPDALGSHSHERRYQAESQNLYHLLQGRPPALAP--------RPMMDHIGNR 859
             +E   + G D L  H H ++Y     N    L G  P   P        +P +D +G  
Sbjct: 774  RNERPTMGGQDGLFLHQHPQQYVT---NPSSHLNGSGPVFHPFDSQHAHVKPQLDFMGPG 830

Query: 860  NQQTPFDMTQAIQHDP---HRSFSSNMNPMQQSLHAPRA--PHVDPAAHHLMMQHISTPG 914
            +       T +  HDP   HR F  NM       H P +  P  D    H MMQ +    
Sbjct: 831  S-------TMSQHHDPPPNHR-FPPNMIHRPPFHHTPTSGHPEFDRLPPH-MMQKMHMQD 881

Query: 915  NFPPEGLQRGVPPSQPVHH--------MPGYRPEMSNVNNFHMHPRQPNYGEFGLMMAGP 966
            N     L +G P S P  H        MPG  PE++    F    RQPNYG     M  P
Sbjct: 882  NLQHHHLMQGFPGSGPQPHHSPHVNNQMPGLIPELNPSQGFPFAHRQPNYG-----MPPP 936

Query: 967  SGPELRGNHPDAFERFLQMELTARSKQMHPAMAGHVPG----GMYGPELDMNLRYR 1018
                 RG HP + +  L ++      +  PA+ G   G    G  G ELD+   YR
Sbjct: 937  GSQVNRGEHPASLQTLLGIQQRMDPAKQIPAV-GQAGGPNRQGSVGHELDLGFGYR 991



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.310    0.128    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 22,104,101
Number of extensions: 979610
Number of successful extensions: 2141
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2134
Number of HSP's successfully gapped: 1
Length of query: 1018
Length of database: 11,106,569
Length adjustment: 108
Effective length of query: 910
Effective length of database: 8,145,641
Effective search space: 7412533310
Effective search space used: 7412533310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 117 (49.7 bits)