Os06g0103600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Aminoacyl-t-RNA synthetase precursor.
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Os06g0103600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Aminoacyl-t-RNA synthetase precursor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.09 | 0.329 | 11.4 | 1.63 | 1.41 | 52.2 | -0.355 | 105 | -0.127 | 21 | 15.04 | 4082 | -- | -- |
| 54.21 | 0.343 | 10.8 | 0.0195 | 1.43 | 1.13 | -0.0509 | -- | -0.215 | 21.1 | 10.78 | 4412 | -- | -- |
| 49.49 | 0.328 | 11.5 | 1.68 | 1.41 | 52.4 | -- | 106 | -0.126 | 21 | 15.05 | 4110 | -- | -- |
| 49.09 | 0.326 | 10.7 | 0.201 | 1.42 | 1.24 | -- | -- | -0.089 | 21 | 18 | 5810 | -- | -- |
| 162.05 | 0.593 | 11.5 | 1.91 | -- | 52.6 | -- | 107 | -0.134 | -- | 15.15 | 4576 | -- | -- |
| 58.92 | 0.36 | 10.7 | -0.218 | 1.4 | -- | -0.276 | -- | -0.212 | 21 | -- | -- | -- | -- |
| 59.18 | 0.36 | 10.7 | -0.209 | 1.4 | -- | -- | -- | -0.212 | 21 | -- | -- | -- | -- |
| 161.39 | 0.592 | 10.7 | 0.245 | -- | 1.25 | -- | -- | -0.0808 | -- | 18.5 | 5820 | -- | -- |
| 49.65 | 0.328 | 10.7 | -- | 1.42 | 1.28 | -- | -- | -0.132 | 21 | 16.37 | 5400 | -- | -- |
| 172.11 | 0.613 | 10.7 | -0.208 | -- | -- | -- | -- | -0.221 | -- | -- | -- | -- | -- |
| 60.33 | 0.363 | 10.7 | -- | 1.4 | -- | -- | -- | -0.189 | 21 | -- | -- | -- | -- |
| 162.3 | 0.593 | 10.7 | -- | -- | 1.08 | -- | -- | -0.133 | -- | 17.95 | 5796 | -- | -- |
| 173.24 | 0.614 | 10.7 | -- | -- | -- | -- | -- | -0.198 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.97 | radiation | 30 | 4320 | < th | dose independent | rect. | 23 | 8 |
| 3 | 47.02 | radiation | 30 | 4320 | < th | dose independent | rect. | 20 | 11 |
| 5 | 47.05 | radiation | 30 | 4320 | < th | dose independent | rect. | 18 | 13 |
| 8 | 47.17 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 2 |
| 30 | 48.34 | humidity | 50 | 43200 | > th | dose independent | rect. | 23 | 6 |
| 31 | 48.39 | humidity | 50 | 43200 | > th | dose independent | rect. | 1 | 4 |
| 55 | 48.60 | radiation | 20 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 108 | 48.94 | humidity | 50 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 114 | 48.98 | humidity | 60 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 133 | 49.12 | humidity | 50 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 135 | 49.12 | humidity | 50 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 137 | 49.12 | humidity | 50 | 43200 | < th | dose dependent | rect. | 17 | 16 |
| 138 | 49.12 | temperature | 15 | 4320 | < th | dose dependent | rect. | 6 | 21 |
| 145 | 49.13 | temperature | 15 | 4320 | < th | dose dependent | rect. | 9 | 18 |
| 154 | 49.16 | temperature | 15 | 4320 | < th | dose dependent | rect. | 19 | 7 |
| 159 | 49.17 | temperature | 15 | 4320 | < th | dose dependent | rect. | 21 | 5 |
| 167 | 49.17 | humidity | 50 | 43200 | < th | dose dependent | rect. | 20 | 13 |
| 173 | 49.18 | humidity | 60 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 198 | 49.21 | temperature | 15 | 4320 | > th | dose independent | rect. | 4 | 1 |
| 202 | 49.21 | temperature | 15 | 4320 | < th | dose dependent | sin | 16 | NA |
| 211 | 49.21 | humidity | 60 | 43200 | < th | dose dependent | rect. | 22 | 10 |
| 219 | 49.22 | humidity | 50 | 43200 | < th | dose independent | rect. | 20 | 12 |
| 348 | 49.30 | radiation | 20 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 369 | 49.31 | temperature | 15 | 4320 | < th | dose independent | rect. | 22 | 19 |
| 371 | 49.31 | temperature | 25 | 720 | < th | dose dependent | sin | 1 | NA |
| 389 | 49.33 | humidity | 50 | 43200 | < th | dose independent | rect. | 17 | 15 |
| 403 | 49.34 | temperature | 15 | 4320 | < th | dose independent | rect. | 12 | 19 |
| 410 | 49.34 | humidity | 50 | 43200 | < th | dose dependent | sin | 11 | NA |
| 422 | 49.35 | temperature | 15 | 4320 | < th | dose independent | rect. | 14 | 17 |
| 437 | 49.35 | temperature | 15 | 4320 | < th | dose independent | rect. | 2 | 23 |
| 439 | 49.35 | temperature | 15 | 4320 | < th | dose independent | rect. | 14 | 23 |
| 495 | 49.37 | temperature | 15 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 501 | 49.37 | temperature | 15 | 4320 | > th | dose independent | rect. | 23 | 8 |
| 506 | 49.37 | temperature | 15 | 4320 | > th | dose independent | rect. | 15 | 16 |
| 510 | 49.37 | temperature | 15 | 4320 | > th | dose independent | rect. | 22 | 19 |
| 519 | 49.38 | temperature | 15 | 4320 | < th | dose independent | no | NA | NA |
| 528 | 49.38 | temperature | 15 | 4320 | < th | dose independent | rect. | 22 | 15 |
| 571 | 49.39 | temperature | 15 | 4320 | > th | dose independent | rect. | 12 | 19 |
| 580 | 49.39 | temperature | 15 | 4320 | < th | dose independent | rect. | 6 | 23 |
| 625 | 49.41 | temperature | 15 | 4320 | > th | dose independent | sin | 7 | NA |
| 626 | 49.41 | temperature | 15 | 4320 | < th | dose independent | sin | 7 | NA |
| 630 | 49.41 | temperature | 15 | 4320 | < th | dose independent | rect. | 22 | 9 |
| 681 | 49.42 | wind | 9 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 682 | 49.42 | temperature | 15 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 687 | 49.42 | temperature | 10 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 688 | 49.42 | temperature | 15 | 4320 | < th | dose independent | rect. | 23 | 1 |
| 735 | 49.42 | temperature | 15 | 4320 | > th | dose independent | rect. | 23 | 14 |
| 742 | 49.42 | humidity | 50 | 43200 | > th | dose independent | rect. | 17 | 15 |
| 755 | 49.42 | temperature | 15 | 4320 | > th | dose independent | rect. | 3 | 22 |
| 758 | 49.42 | wind | 9 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 759 | 49.42 | temperature | 15 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 764 | 49.42 | temperature | 10 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 799 | 49.42 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 14 |
| 832 | 49.43 | temperature | 15 | 4320 | < th | dose independent | rect. | 12 | 13 |
| 858 | 49.43 | temperature | 15 | 4320 | > th | dose independent | rect. | 15 | 22 |
| 949 | 49.45 | temperature | 15 | 4320 | < th | dose independent | rect. | 15 | 9 |