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Os05g0596600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to SMC5 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.68 (0.0181) R2 : 0.55
β1 : 0.706 (0.0664) R2dD : 0.116 R2D : 0.045
β2 : 0.93 (0.0474) R2dC : 0.382 R2C : 0.33
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.41 (0.0387) R2dN8 : 0.148 R2N8 : 0.0591
σ : 0.341
deviance : 53.04
__
_____
C
peak time of C : 18
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
41.84 0.304 9.8 -0.11 0.929 -0.0835 -0.312 4.74 0.277 18.1 29.77 4798 -- --
44.22 0.31 9.69 0.756 0.968 0.381 -0.276 -- 0.381 18.4 29.7 2666 -- --
42.01 0.302 9.8 -0.108 0.926 -0.0573 -- 4.57 0.265 18.1 29.66 4791 -- --
43.8 0.308 9.69 0.846 0.913 0.469 -- -- 0.358 18.3 29.89 2676 -- --
84.3 0.428 9.78 -0.105 -- -0.00944 -- 4.61 0.235 -- 29.5 4238 -- --
52.73 0.34 9.68 0.703 0.932 -- -0.354 -- 0.411 18 -- -- -- --
53.04 0.341 9.68 0.706 0.93 -- -- -- 0.41 18 -- -- -- --
86.8 0.434 9.69 0.814 -- 0.501 -- -- 0.295 -- 30.4 2695 -- --
61.55 0.365 9.72 -- 0.91 0.37 -- -- 0.26 18.2 31.22 3206 -- --
97.84 0.462 9.67 0.679 -- -- -- -- 0.389 -- -- -- -- --
66.18 0.381 9.7 -- 0.919 -- -- -- 0.331 18 -- -- -- --
103.72 0.474 9.7 -- -- 0.412 -- -- 0.231 -- 32 2655 -- --
110 0.49 9.68 -- -- -- -- -- 0.313 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 39.62 temperature 30.0 270 < th dose independent rect. 7 20
4 39.91 temperature 30.0 270 < th dose independent rect. 7 9
11 40.76 humidity 60.0 14400 > th dose independent rect. 12 1
15 40.96 humidity 60.0 14400 < th dose independent rect. 12 1
27 41.54 precipitation 0.1 270 < th dose independent rect. 3 3
28 41.54 precipitation 0.1 270 < th dose dependent rect. 3 3
29 41.55 wind 5.0 270 < th dose independent rect. 3 3
31 41.55 humidity 50.0 270 > th dose dependent rect. 7 19
38 41.73 temperature 30.0 4320 < th dose independent rect. 13 1
39 41.79 temperature 30.0 4320 > th dose independent rect. 13 1
45 41.85 wind 5.0 270 < th dose independent rect. 2 5
48 41.88 atmosphere 1015.0 270 < th dose dependent rect. 3 3
53 41.93 precipitation 0.1 270 < th dose independent rect. 2 5
54 41.93 wind 9.0 270 < th dose dependent rect. 3 3
55 41.93 precipitation 0.1 270 < th dose dependent rect. 2 5
58 41.94 atmosphere 995.0 30 > th dose dependent rect. 9 19
61 41.97 temperature 30.0 1440 < th dose independent rect. 20 16
66 41.98 humidity 70.0 14400 > th dose independent rect. 9 4
69 41.98 temperature 30.0 4320 < th dose independent rect. 18 20
73 42.00 temperature 30.0 1440 < th dose independent rect. 22 14
75 42.00 temperature 25.0 1440 > th dose dependent rect. 7 2
77 42.02 humidity 70.0 14400 < th dose independent rect. 9 4
79 42.03 temperature 30.0 1440 < th dose independent rect. 2 10
80 42.03 humidity 70.0 14400 < th dose independent rect. 16 21
82 42.04 temperature 30.0 1440 < th dose independent rect. 7 5
83 42.04 temperature 30.0 1440 < th dose independent rect. 4 8
89 42.05 temperature 30.0 4320 < th dose independent rect. 20 19
90 42.05 humidity 70.0 14400 < th dose independent rect. 18 19
97 42.06 temperature 30.0 4320 < th dose independent rect. 7 8
98 42.06 temperature 30.0 4320 < th dose independent rect. 2 13
99 42.06 temperature 30.0 4320 < th dose independent rect. 22 17
101 42.06 humidity 70.0 14400 > th dose independent rect. 18 19
120 42.09 wind 9.0 270 < th dose independent rect. 6 21
121 42.09 humidity 70.0 14400 > th dose independent rect. 16 21
151 42.12 humidity 50.0 30 > th dose dependent rect. 9 19
163 42.13 temperature 30.0 4320 > th dose independent rect. 18 21
165 42.14 wind 5.0 270 < th dose independent rect. 4 1
202 42.18 wind 7.0 43200 < th dose dependent rect. 4 3
209 42.19 wind 9.0 270 < th dose dependent rect. 2 5
212 42.20 temperature 30.0 1440 < th dose independent sin 8 NA
220 42.21 humidity 60.0 14400 > th dose independent rect. 12 7
240 42.21 wind 1.0 43200 > th dose dependent rect. 4 3
285 42.24 temperature 30.0 4320 < th dose independent sin 2 NA
295 42.26 atmosphere 995.0 30 > th dose independent rect. 9 19
296 42.26 humidity 50.0 270 > th dose independent rect. 6 21
304 42.27 temperature 10.0 270 > th dose independent rect. 3 3
306 42.27 temperature 30.0 270 < th dose independent rect. 3 3
307 42.27 humidity 50.0 270 > th dose independent rect. 3 3
310 42.27 atmosphere 995.0 270 > th dose independent rect. 3 3
311 42.27 atmosphere 1015.0 270 < th dose independent rect. 3 3
312 42.27 radiation 20.0 270 < th dose independent rect. 3 3
318 42.27 temperature 10.0 270 > th dose independent rect. 6 21
325 42.28 humidity 80.0 14400 < th dose dependent rect. 16 1
327 42.29 temperature 30.0 1440 > th dose independent sin 7 NA
333 42.29 humidity 80.0 14400 < th dose dependent rect. 12 8
354 42.30 temperature 30.0 4320 < th dose independent rect. 10 23
357 42.30 humidity 80.0 14400 < th dose dependent rect. 10 10
363 42.31 temperature 30.0 4320 < th dose independent rect. 10 19
369 42.31 temperature 30.0 4320 < th dose independent rect. 15 23
377 42.32 precipitation 0.1 270 < th dose independent rect. 4 1
382 42.32 humidity 60.0 14400 < th dose independent rect. 12 7
387 42.32 temperature 30.0 4320 < th dose independent rect. 10 11
388 42.32 humidity 70.0 14400 < th dose independent rect. 9 11
412 42.32 wind 9.0 43200 < th dose dependent rect. 5 1
413 42.32 precipitation 0.1 270 < th dose dependent rect. 4 1
418 42.32 humidity 80.0 14400 < th dose dependent rect. 15 5
483 42.33 humidity 80.0 14400 < th dose dependent sin 18 NA
490 42.34 humidity 70.0 14400 < th dose independent no NA NA
562 42.34 wind 1.0 43200 > th dose dependent rect. 5 1
568 42.35 temperature 30.0 4320 < th dose independent no NA NA
569 42.35 humidity 70.0 14400 < th dose independent sin 11 NA
571 42.35 humidity 70.0 14400 > th dose independent rect. 9 11
576 42.35 temperature 30.0 4320 < th dose independent rect. 7 14
594 42.35 temperature 30.0 4320 < th dose independent rect. 2 19
655 42.36 temperature 30.0 4320 > th dose independent sin 2 NA
706 42.36 wind 9.0 270 < th dose independent rect. 7 19
711 42.36 humidity 70.0 270 > th dose independent rect. 7 19
738 42.37 humidity 70.0 14400 > th dose independent sin 11 NA
767 42.37 humidity 50.0 270 > th dose independent rect. 7 19
779 42.37 atmosphere 1015.0 270 < th dose dependent rect. 2 5
803 42.38 humidity 50.0 14400 > th dose independent rect. 15 14
834 42.39 wind 1.0 14400 < th dose independent rect. 4 2
851 42.39 humidity 70.0 14400 > th dose independent rect. 2 18
864 42.39 humidity 70.0 14400 < th dose independent rect. 12 23
866 42.39 humidity 60.0 14400 > th dose dependent rect. 12 1
872 42.40 humidity 70.0 14400 < th dose independent sin 0 NA
895 42.40 temperature 30.0 4320 > th dose independent rect. 10 23
902 42.40 wind 9.0 270 < th dose dependent rect. 4 1
911 42.41 humidity 70.0 14400 > th dose independent no NA NA
915 42.41 temperature 30.0 14400 > th dose independent rect. 15 1
972 42.41 temperature 30.0 4320 > th dose independent rect. 12 21
998 42.41 radiation 40.0 270 < th dose dependent rect. 3 3