BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0596600 Os05g0596600|AK121149
(1065 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G15920.1 | chr5:5196210-5199559 FORWARD LENGTH=1054 1142 0.0
AT3G47460.1 | chr3:17486765-17493178 FORWARD LENGTH=1172 58 3e-08
AT5G61460.1 | chr5:24714551-24721841 REVERSE LENGTH=1058 57 4e-08
AT5G07660.1 | chr5:2422839-2429912 FORWARD LENGTH=1059 57 4e-08
>AT5G15920.1 | chr5:5196210-5199559 FORWARD LENGTH=1054
Length = 1053
Score = 1142 bits (2953), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 576/1057 (54%), Positives = 744/1057 (70%), Gaps = 16/1057 (1%)
Query: 3 SSRAAKRPKVDXXXXXXXXXXXXXXXQRGDDDYVPGNIVEIELCNFMTYDHLTCRPGPRL 62
S R AKRPK+ RG+DD++PGNI+EIEL NFMT++HL C+PG RL
Sbjct: 2 SERRAKRPKIS----------------RGEDDFLPGNIIEIELHNFMTFNHLVCKPGSRL 45
Query: 63 NLVVGPNGSGKSSLVCXXXXXXXXXXXXXGRASSVAAFVKRGEDSGHVKISLRGNTPDHK 122
NLV+GPNGSGKSSLVC GRA+SV A+VKRGEDSG+VKISLRGNT +
Sbjct: 46 NLVIGPNGSGKSSLVCAIALCLGGEPQLLGRATSVGAYVKRGEDSGYVKISLRGNTREEN 105
Query: 123 LCITRKVDTNNKSEWQLDGTTVPKKEVIDLIKKFNIQVNNLTQFLPQDRVCEFAKLTPIQ 182
L I RK+DT NKSEW +G+TV KK+++++I+KFNIQVNNLTQFLPQDRVCEFAKLTP+Q
Sbjct: 106 LTIFRKIDTRNKSEWMFNGSTVSKKDIVEIIQKFNIQVNNLTQFLPQDRVCEFAKLTPVQ 165
Query: 183 LLEETEKAVGDPNLPIQHRQLIDRSKELKILQVAVKQKEQTXXXXXXXXXXXXXDVERVR 242
LLEETEKAVGDP LP+ HR L+++S++LK L+ AV + +T DVERVR
Sbjct: 166 LLEETEKAVGDPQLPVHHRALVEKSRDLKQLERAVAKNGETLNQLKALVDEQEKDVERVR 225
Query: 243 QRDRXXXXXXXXXXXXPWLKYDMXXXXXXXXXXXXXXXXXXXXXXXXIWEDSKGPVEELK 302
QR+ PWLKYDM K P+E+ K
Sbjct: 226 QRELFLTKVDSMKKKLPWLKYDMKKAEYMDAKKRMKEAEKKLDEAAKNLNSMKEPIEKQK 285
Query: 303 KKKMSHTSNTKRINSHMAENMKRRQDITHKELQLKGQLRATLEDIEDLKRQERSRQQRIX 362
K+K S K++ + M N + R + KE + ++ AT +++E+LK+QE RQ+RI
Sbjct: 286 KEKAETDSKCKKVKNLMDANGRNRCHLLEKEDEADARVVATYKELEELKKQEEHRQERIL 345
Query: 363 XXXXXXXXXXRELDDLQPYEAPKAEMIQLTEEIARLTCDINELKRKKTDMESQLVREREN 422
REL +L YE P A++ +L+ ++ L IN K +K D E L ++R
Sbjct: 346 KATEDLVAAERELQNLPVYERPVAKLEELSSQVTELHHSINGKKNQKEDNEKLLSQKRYT 405
Query: 423 LRNCSDRLKQMENKNNKLLQALRYSGAEKINEAYNWVQDNRHMFRAEVYGPVLLEVNVQD 482
LR C D+LK MEN NNKLL+AL SGA++I +AY WVQ NRH F+ EVYGPVL+EVNV +
Sbjct: 406 LRQCVDKLKDMENANNKLLKALANSGADRIFDAYQWVQQNRHEFKREVYGPVLVEVNVPN 465
Query: 483 KVHASYLEGHVASYIWKSFITQDASDRDLLVRQMKQYDIPVLNFMGDKGIRREPFNITLE 542
+ +A +LEGHV+ YIWKSFITQD DRDLLV+ +K++D+PVLN++G+ G ++ PF+I+ +
Sbjct: 466 RENACFLEGHVSFYIWKSFITQDPEDRDLLVKNLKRFDVPVLNYVGNSGNQKAPFHISDQ 525
Query: 543 MQQVGIYSRLDQVFEAPPAVKDVLISQANLDRSYIGTDETHNRADDVPKLGISDFWTPDN 602
M+ +GI++RLDQ+F+AP AVK+VL SQ L+ SYIG+ T RA++V KLGI DFWTPDN
Sbjct: 526 MRSLGIHARLDQIFDAPDAVKEVLNSQFGLEDSYIGSKITDQRAEEVYKLGIKDFWTPDN 585
Query: 603 HYRWSRSRYGGHLSAFVDAVNPSRLFMCNLDVIDSERLRSQKDKHIKDIDGMXXXXXXXX 662
HYRWS SRYGGH SA VD+V SRL +C +DV + E+LRS+K++ I M
Sbjct: 586 HYRWSSSRYGGHSSASVDSVYQSRLLLCGVDVGELEKLRSRKEELEDSILFMEETHKSLQ 645
Query: 663 XXXXXXXXXAAKIRRKKEEITDTMMFEKKRQEETRRRVDIKRRMLETIYKEEDMESSKRK 722
AAK+ +++EEI + EKK++ E R ++ LE++ +EEDM++S K
Sbjct: 646 TEQRRLEEEAAKLHKEREEIVNVSYLEKKKRRELESRYQQRKTKLESLEQEEDMDASVAK 705
Query: 723 FVDQAAKLNDQRYELVLKLKDLLIEAVALKWSCTQKNMASIELDTKIWEMEKDVKKLEKN 782
+DQA++ N RY + LK LL+EAVA KWS +K+MASIEL+ KI E E ++K+ EK
Sbjct: 706 LIDQASRANADRYTYAINLKKLLVEAVAHKWSYAEKHMASIELERKIRESEINIKQYEKT 765
Query: 783 AIEAAKEYENCKRKTQEHKQQLSNAKQHAESIAMITEDLAKKFLEMPTTIEELDCAIQDT 842
A + + E CK++ + +Q+L+ AK+ AES+A IT +L K+F+EMPTT+EEL+ AIQD
Sbjct: 766 AQQLSLAVEYCKKEVEGKQQRLATAKRDAESVATITPELKKEFMEMPTTVEELEAAIQDN 825
Query: 843 ESEANSMLFLNQNVLLEYQSRQREIESISIKLEDDKGECERCYSDIEATKGKWLPTLRTL 902
S+ANS+LF+N+N+L EY+ RQ +I +IS KLE DK + C +I++ K KWLPTLR L
Sbjct: 826 LSQANSILFINENILQEYEHRQSQIYTISTKLETDKRDLSICMKEIDSLKEKWLPTLRQL 885
Query: 903 VSKINSTFSRNFQEMAVAGEVSLDEHGLDFEQYGILIKVKFRQTGQLQVLSAHHQSGGER 962
V +IN TFS NFQEMAVAGEVSLDE DF+QYGI IKVKFR++GQLQVLS+HHQSGGER
Sbjct: 886 VGQINETFSHNFQEMAVAGEVSLDERDTDFDQYGIHIKVKFRESGQLQVLSSHHQSGGER 945
Query: 963 SVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1022
SVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL
Sbjct: 946 SVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKL 1005
Query: 1023 LPDLEYSDACSILNIMNGPWIEKPAKAWSTGDCWRTV 1059
LP+LEYS+ACSILNIMNGP+I +P+K WS GD W ++
Sbjct: 1006 LPELEYSEACSILNIMNGPYIAEPSKVWSLGDSWGSL 1042
>AT3G47460.1 | chr3:17486765-17493178 FORWARD LENGTH=1172
Length = 1171
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 78/169 (46%), Gaps = 15/169 (8%)
Query: 39 NIVEIELCNFMTYDHLTCRPG--PRLNLVVGPNGSGKSSLVCXXXXXXXXXXXXXGRASS 96
+I EI L F +Y T PG P N + G NGSGKS+++ RA++
Sbjct: 2 HIKEICLEGFKSYATRTVVPGFDPHFNAITGLNGSGKSNILDSICFVLGITNLQQVRAAN 61
Query: 97 VAAFVKRGEDSGHVKISL--------RGNTP----DH-KLCITRKVDTNNKSEWQLDGTT 143
+ V + +G + ++ R +P DH ++ +TR++ K+++ ++G
Sbjct: 62 LQELVYKQGQAGITRATVSVTFDNSERNRSPLGHEDHSEITVTRQIVVGGKNKYLINGKL 121
Query: 144 VPKKEVIDLIKKFNIQVNNLTQFLPQDRVCEFAKLTPIQLLEETEKAVG 192
+V +L + VNN + Q R+ + + P+++L E+A G
Sbjct: 122 AQPNQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPMEILSMLEEAAG 170
>AT5G61460.1 | chr5:24714551-24721841 REVERSE LENGTH=1058
Length = 1057
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 17/163 (10%)
Query: 30 RGDDDYV-----PGNIVEIELCNFMTYDHLTCRPGPRLNLVVGPNGSGKSSLVCXXXXXX 84
R D ++ G+I+ I++ NFM + +L G +N + G NGSGKS+++
Sbjct: 7 RASDSFIKQRSGSGSILRIKVENFMCHSNLQIEFGEWVNFITGQNGSGKSAILTALCVAF 66
Query: 85 XXXXXXXGRASSVAAFVKRGEDSGHVKISLRGNTPDH--------KLCITRKVDTNNKSE 136
RA+++ F+K G V++ ++ + D + I R++ + +
Sbjct: 67 GCRARGTQRAATLKDFIKTGCSYAVVQVEMKNSGEDAFKPEIYGGVIIIERRITESATAT 126
Query: 137 WQLD--GTTVPKK--EVIDLIKKFNIQVNNLTQFLPQDRVCEF 175
D G V K E+ +L++ FNI V N + QD+ EF
Sbjct: 127 VLKDYLGKKVSNKRDELRELVEHFNIDVENPCVVMSQDKSREF 169
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 76/162 (46%), Gaps = 7/162 (4%)
Query: 860 YQSRQREIESISIKLEDDKGECERCYSDIEATKGKWLPTLRTLVSKINSTFSRNFQEMAV 919
Y+S +R+I +D + + C + +++ K+ L ++ F+ + + +
Sbjct: 880 YESLERKIAKKRKSYQDHREKLMACKNALDSRWAKFQRNASLLRRQLTWQFNAHLGKKGI 939
Query: 920 AGEVSLDEHGLDFEQYGILIKVKFRQTGQLQVL-SAHHQSGGERSVSTILYLVSLQDLTN 978
+G + + +E + I+VK Q V+ SGGERS ST+ + ++L ++T
Sbjct: 940 SGHIKVS-----YENKTLSIEVKMPQDATSNVVRDTKGLSGGERSFSTLCFALALHEMTE 994
Query: 979 CPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTP 1020
PFR +DE + MD ++ + LV A + Q +TP
Sbjct: 995 APFRAMDEFDVFMDAVSRKISLDALVDFAIGEGS-QWMFITP 1035
>AT5G07660.1 | chr5:2422839-2429912 FORWARD LENGTH=1059
Length = 1058
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 68/156 (43%), Gaps = 12/156 (7%)
Query: 32 DDDYVPGNIVEIELCNFMTYDHLTCRPGPRLNLVVGPNGSGKSSLVCXXXXXXXXXXXXX 91
D G I+ I L NFM + +L G +N + G NGSGKS+++
Sbjct: 15 DQQTSSGKILRIRLENFMCHSNLEIEFGDWVNFITGQNGSGKSAILTALCVAFGCRARGT 74
Query: 92 GRASSVAAFVKRGEDSGHVKISLRGNTPDH--------KLCITRKVDTNNK----SEWQL 139
RA+++ F+K G V + L+ D L I R++ + + Q
Sbjct: 75 QRAATLKDFIKTGCSYALVYVELKNQGEDAFKPEIYGDTLIIERRISDSTSLTVLKDHQG 134
Query: 140 DGTTVPKKEVIDLIKKFNIQVNNLTQFLPQDRVCEF 175
+ K+E+ +L++ +NI V N + QD+ EF
Sbjct: 135 RKISSRKEELRELVEHYNIDVENPCVIMSQDKSREF 170
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.132 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 20,372,167
Number of extensions: 818742
Number of successful extensions: 3947
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3944
Number of HSP's successfully gapped: 9
Length of query: 1065
Length of database: 11,106,569
Length adjustment: 109
Effective length of query: 956
Effective length of database: 8,118,225
Effective search space: 7761023100
Effective search space used: 7761023100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 117 (49.7 bits)