Os05g0596200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0596200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.7 | 0.214 | 10.3 | 0.117 | 1.14 | 0.712 | -0.144 | -0.74 | -0.0639 | 14 | 25.47 | 333 | -- | -- |
| 20.73 | 0.212 | 10.2 | 0.219 | 1.17 | 0.642 | -0.184 | -- | -0.0308 | 14 | 25.8 | 389 | -- | -- |
| 20.62 | 0.212 | 10.3 | 0.108 | 1.17 | 0.729 | -- | -0.95 | -0.0409 | 14 | 26.3 | 389 | -- | -- |
| 20.84 | 0.213 | 10.2 | 0.201 | 1.18 | 0.639 | -- | -- | -0.0353 | 14 | 25.8 | 408 | -- | -- |
| 70.28 | 0.393 | 10.3 | -0.178 | -- | 1.71 | -- | -1.48 | -0.274 | -- | 24 | 25 | -- | -- |
| 27.84 | 0.247 | 10.2 | 0.309 | 1.36 | -- | -0.0553 | -- | -0.00298 | 14.7 | -- | -- | -- | -- |
| 27.85 | 0.247 | 10.2 | 0.308 | 1.36 | -- | -- | -- | -0.00331 | 14.7 | -- | -- | -- | -- |
| 70.78 | 0.392 | 10.3 | 0.00577 | -- | 1.63 | -- | -- | -0.221 | -- | 24.1 | 23 | -- | -- |
| 21.88 | 0.218 | 10.3 | -- | 1.17 | 0.676 | -- | -- | -0.0579 | 13.9 | 25.7 | 423 | -- | -- |
| 135.85 | 0.545 | 10.3 | 0.25 | -- | -- | -- | -- | -0.0377 | -- | -- | -- | -- | -- |
| 30.35 | 0.258 | 10.3 | -- | 1.35 | -- | -- | -- | -0.0376 | 14.7 | -- | -- | -- | -- |
| 70.77 | 0.392 | 10.3 | -- | -- | 1.63 | -- | -- | -0.22 | -- | 24.1 | 21 | -- | -- |
| 137.5 | 0.547 | 10.3 | -- | -- | -- | -- | -- | -0.0654 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.94 | temperature | 30.0 | 270 | < th | dose independent | rect. | 7 | 21 |
| 3 | 19.03 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 15 | 12 |
| 12 | 19.51 | radiation | 10.0 | 270 | < th | dose independent | rect. | 15 | 12 |
| 15 | 19.63 | temperature | 30.0 | 270 | < th | dose independent | rect. | 16 | 11 |
| 27 | 19.86 | temperature | 30.0 | 270 | < th | dose independent | rect. | 8 | 12 |
| 28 | 19.88 | temperature | 30.0 | 720 | < th | dose independent | rect. | 17 | 19 |
| 29 | 19.88 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 12 | 21 |
| 31 | 19.93 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 12 | 11 |
| 39 | 20.04 | temperature | 30.0 | 720 | < th | dose independent | rect. | 8 | 4 |
| 48 | 20.12 | temperature | 30.0 | 720 | < th | dose independent | rect. | 24 | 20 |
| 50 | 20.16 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 14 |
| 52 | 20.18 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 12 | 11 |
| 59 | 20.24 | radiation | 1.0 | 90 | < th | dose independent | sin | 13 | NA |
| 63 | 20.25 | radiation | 1.0 | 90 | > th | dose independent | sin | 13 | NA |
| 67 | 20.27 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 12 | 16 |
| 77 | 20.31 | temperature | 30.0 | 720 | < th | dose independent | rect. | 24 | 13 |
| 84 | 20.32 | temperature | 25.0 | 270 | > th | dose dependent | sin | 20 | NA |
| 90 | 20.34 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 4 | 12 |
| 93 | 20.35 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 12 | 6 |
| 111 | 20.45 | humidity | 70.0 | 270 | > th | dose independent | rect. | 16 | 11 |
| 120 | 20.47 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 14 | 18 |
| 125 | 20.48 | radiation | 1.0 | 90 | < th | dose dependent | sin | 13 | NA |
| 128 | 20.49 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 14 | 18 |
| 157 | 20.62 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 4 | 12 |
| 182 | 20.67 | temperature | 25.0 | 90 | > th | dose dependent | sin | 16 | NA |
| 194 | 20.70 | temperature | 25.0 | 30 | > th | dose dependent | sin | 14 | NA |
| 209 | 20.73 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 11 | 22 |
| 234 | 20.79 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 20 | 21 |
| 259 | 20.85 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 12 | 4 |
| 263 | 20.86 | radiation | 1.0 | 270 | > th | dose independent | rect. | 10 | 22 |
| 281 | 20.90 | radiation | 1.0 | 90 | > th | dose independent | rect. | 15 | 17 |
| 293 | 20.92 | temperature | 30.0 | 720 | < th | dose independent | rect. | 16 | 4 |
| 310 | 20.93 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 20 | 20 |
| 331 | 20.96 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 2 | 21 |
| 371 | 21.00 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 5 | 18 |
| 376 | 21.01 | temperature | 30.0 | 270 | > th | dose independent | rect. | 12 | 6 |
| 397 | 21.02 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 433 | 21.06 | temperature | 25.0 | 270 | > th | dose dependent | no | NA | NA |
| 451 | 21.07 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 458 | 21.08 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 4 | 20 |
| 652 | 21.22 | temperature | 30.0 | 270 | > th | dose independent | sin | 20 | NA |
| 696 | 21.24 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 850 | 21.36 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 14 |
| 858 | 21.36 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 859 | 21.36 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 912 | 21.40 | temperature | 20.0 | 720 | > th | dose dependent | sin | 2 | NA |
| 986 | 21.45 | radiation | 1.0 | 90 | < th | dose dependent | no | NA | NA |
| 997 | 21.46 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 16 | 1 |