BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0596200 Os05g0596200|AK107887
         (101 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G11600.1  | chr5:3733815-3735015 REVERSE LENGTH=243            124   1e-29
AT1G19990.1  | chr1:6935327-6936665 FORWARD LENGTH=252             84   1e-17

>AT5G11600.1 | chr5:3733815-3735015 REVERSE LENGTH=243
          Length = 242

 Score =  124 bits (311), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 63/104 (60%), Positives = 78/104 (75%), Gaps = 10/104 (9%)

Query: 2   SSSSAAALARGKSGISAAKFEASKGLGAKPKRSASATGS----RGKTEKKVYSLPGQKFD 57
           ++S+AA+L +GK+  ++      K       ++ SAT S    + K EKKVYSL GQKFD
Sbjct: 77  TTSAAASLVKGKAQTTSTVVSLVKA------KTTSATVSLVKGKAKREKKVYSLAGQKFD 130

Query: 58  PPEEREPLRIFYESLSKQIPSSEMAEFWLMEHGLLSPERAKKAY 101
           PPEEREPLRIFYESLSKQIP SEMAEFWLMEHG+LSPE+AK+A+
Sbjct: 131 PPEEREPLRIFYESLSKQIPGSEMAEFWLMEHGMLSPEKAKRAF 174



>AT1G19990.1 | chr1:6935327-6936665 FORWARD LENGTH=252
          Length = 251

 Score = 84.0 bits (206), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 36/52 (69%), Positives = 43/52 (82%)

Query: 49  YSLPGQKFDPPEEREPLRIFYESLSKQIPSSEMAEFWLMEHGLLSPERAKKA 100
           Y LPGQK + P+ER+PLRIFYESL KQIP+S+MA+ WLME GLL  E+AKK 
Sbjct: 115 YDLPGQKREQPDERDPLRIFYESLYKQIPTSDMAQIWLMESGLLPAEKAKKV 166



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.308    0.123    0.338 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,166,744
Number of extensions: 81477
Number of successful extensions: 205
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 2
Length of query: 101
Length of database: 11,106,569
Length adjustment: 71
Effective length of query: 30
Effective length of database: 9,160,033
Effective search space: 274800990
Effective search space used: 274800990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 104 (44.7 bits)