Os05g0594900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to U6 snRNA-associated Sm-like protein LSm8.
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Os05g0594900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to U6 snRNA-associated Sm-like protein LSm8.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.38 | 0.35 | 8.78 | -0.173 | 0.327 | 1.2 | -0.0508 | 0.346 | -0.0353 | 10.8 | 21.2 | 1331 | -- | -- |
| 55.56 | 0.347 | 8.79 | -0.238 | 0.333 | 1.16 | -0.0468 | -- | -0.0574 | 10.8 | 21.3 | 1311 | -- | -- |
| 55.39 | 0.347 | 8.78 | -0.173 | 0.328 | 1.21 | -- | 0.355 | -0.0352 | 10.9 | 21.2 | 1330 | -- | -- |
| 55.57 | 0.347 | 8.79 | -0.242 | 0.334 | 1.16 | -- | -- | -0.0545 | 10.9 | 21.3 | 1310 | -- | -- |
| 61.43 | 0.365 | 8.78 | -0.161 | -- | 1.19 | -- | 0.388 | -0.0291 | -- | 21.4 | 1455 | -- | -- |
| 93.85 | 0.454 | 8.72 | 0.233 | 0.282 | -- | -0.0738 | -- | 0.266 | 10.2 | -- | -- | -- | -- |
| 93.86 | 0.454 | 8.72 | 0.23 | 0.282 | -- | -- | -- | 0.266 | 10.3 | -- | -- | -- | -- |
| 61.7 | 0.366 | 8.8 | -0.252 | -- | 1.15 | -- | -- | -0.0542 | -- | 21.4 | 1455 | -- | -- |
| 56.89 | 0.351 | 8.78 | -- | 0.332 | 1.08 | -- | -- | -0.00968 | 10.9 | 21.4 | 1278 | -- | -- |
| 98.69 | 0.464 | 8.73 | 0.226 | -- | -- | -- | -- | 0.266 | -- | -- | -- | -- | -- |
| 95.26 | 0.457 | 8.73 | -- | 0.28 | -- | -- | -- | 0.241 | 10.2 | -- | -- | -- | -- |
| 62.7 | 0.369 | 8.8 | -- | -- | 0.979 | -- | -- | -0.0358 | -- | 22.1 | 1486 | -- | -- |
| 100.04 | 0.467 | 8.73 | -- | -- | -- | -- | -- | 0.24 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 55.29 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 8 | 56.28 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 9 |
| 44 | 56.94 | temperature | 25 | 1440 | < th | dose dependent | sin | 14 | NA |
| 52 | 57.06 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 96 | 57.75 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 100 | 57.78 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 101 | 57.78 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 104 | 57.80 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 22 |
| 105 | 57.81 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 124 | 57.95 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 125 | 57.96 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 129 | 58.02 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 157 | 58.22 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 161 | 58.22 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 165 | 58.23 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 23 |
| 172 | 58.26 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 175 | 58.27 | temperature | 25 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 182 | 58.32 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 186 | 58.34 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 267 | 58.79 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 275 | 58.83 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 311 | 58.96 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 312 | 58.97 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 319 | 59.01 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 322 | 59.02 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 6 |
| 346 | 59.15 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 374 | 59.24 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 3 |
| 375 | 59.26 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 376 | 59.27 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 475 | 59.58 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 488 | 59.63 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 503 | 59.68 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 622 | 60.10 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 656 | 60.24 | temperature | 20 | 1440 | > th | dose independent | rect. | 10 | 21 |
| 665 | 60.26 | temperature | 20 | 1440 | > th | dose independent | rect. | 16 | 15 |
| 712 | 60.38 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 21 |
| 739 | 60.48 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 771 | 60.63 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 792 | 60.71 | temperature | 20 | 1440 | < th | dose independent | rect. | 9 | 22 |
| 799 | 60.73 | temperature | 20 | 1440 | < th | dose independent | rect. | 16 | 14 |
| 803 | 60.74 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 836 | 60.83 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 847 | 60.86 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 862 | 60.92 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 18 |
| 877 | 60.95 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 20 |
| 912 | 61.02 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 924 | 61.06 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 942 | 61.09 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 23 |