BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0594900 Os05g0594900|AK121070
         (99 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G65700.3  | chr1:24434463-24435870 REVERSE LENGTH=142          149   4e-37
AT3G14080.1  | chr3:4667717-4668989 FORWARD LENGTH=129             65   7e-12
AT1G19120.1  | chr1:6608288-6609162 FORWARD LENGTH=129             64   2e-11
AT3G11500.1  | chr3:3621626-3622474 REVERSE LENGTH=80              45   9e-06

>AT1G65700.3 | chr1:24434463-24435870 REVERSE LENGTH=142
          Length = 141

 Score =  149 bits (375), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 81/140 (57%), Positives = 89/140 (63%), Gaps = 43/140 (30%)

Query: 3   SAGPGLESLVDQIISVITNDGRNIVGTLRGFDQATNIILDESHERVYSTR---------- 52
           +A  GLE+LVDQIISVITNDGRNIVG L+GFDQATNIILDESHERV+ST+          
Sbjct: 2   AATTGLETLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKCHLFNRILRK 61

Query: 53  ---------------------------------EGVQQLVLGLYIIRGDNISVVGEVDEE 79
                                            EGVQQ VLGLYIIRGDNI V+GE+DEE
Sbjct: 62  LTQIFKIGLVLQFFVCMSGHVDTSLDKCSWIFLEGVQQHVLGLYIIRGDNIGVIGELDEE 121

Query: 80  LDARLDLSNLRAHPLKPVIH 99
           LDA LD S LRAHPLKPV+H
Sbjct: 122 LDASLDFSKLRAHPLKPVVH 141



>AT3G14080.1 | chr3:4667717-4668989 FORWARD LENGTH=129
          Length = 128

 Score = 65.1 bits (157), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 53/86 (61%), Gaps = 8/86 (9%)

Query: 1  MASAGP-------GLESLVDQIISVITNDGRNIVGTLRGFDQATNIILDESHERVYSTRE 53
          M+ AGP        L S +D+ + V+  DGR ++GTLR FDQ  N +L+ + ERV    E
Sbjct: 1  MSWAGPEEIYLSTSLASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVI-VGE 59

Query: 54 GVQQLVLGLYIIRGDNISVVGEVDEE 79
              + LGLY+IRG+N+ ++GE+D E
Sbjct: 60 QYCDIPLGLYVIRGENVVLIGELDTE 85



>AT1G19120.1 | chr1:6608288-6609162 FORWARD LENGTH=129
          Length = 128

 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 57/94 (60%), Gaps = 11/94 (11%)

Query: 1  MASAGP-------GLESLVDQIISVITNDGRNIVGTLRGFDQATNIILDESHERVYSTRE 53
          M+ A P        L + +D+ + V+  DGR ++G LR FDQ  N +L+E++ERV    +
Sbjct: 1  MSWAAPDDIFFSTSLAAYLDKKLLVLLRDGRKLMGLLRSFDQFANAVLEEAYERVI-VGD 59

Query: 54 GVQQLVLGLYIIRGDNISVVGEVD---EELDARL 84
              + LGLYIIRG+N+ ++GE+D   EEL A +
Sbjct: 60 LYCDIPLGLYIIRGENVVLIGELDVEKEELPAHM 93



>AT3G11500.1 | chr3:3621626-3622474 REVERSE LENGTH=80
          Length = 79

 Score = 44.7 bits (104), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 7/75 (9%)

Query: 1  MASAG--PGLESLVDQIISVITNDGRNIVGTLRGFDQATNIILDESHERVYSTREGVQQL 58
          M+ +G  P L+  +D+ + +  N  R +VGTLRGFDQ  N+++D + E       G  + 
Sbjct: 1  MSRSGQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVE-----VNGDDKT 55

Query: 59 VLGLYIIRGDNISVV 73
           +G+ +IRG++I  V
Sbjct: 56 DIGMVVIRGNSIVTV 70



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.139    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,043,301
Number of extensions: 75461
Number of successful extensions: 227
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 226
Number of HSP's successfully gapped: 6
Length of query: 99
Length of database: 11,106,569
Length adjustment: 69
Effective length of query: 30
Effective length of database: 9,214,865
Effective search space: 276445950
Effective search space used: 276445950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 104 (44.7 bits)