Os05g0576500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : 2OG-Fe(II) oxygenase domain containing protein.
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Os05g0576500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : 2OG-Fe(II) oxygenase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 314.05 | 0.833 | 4.73 | 2.93 | 1.05 | -1.65 | 0.665 | 0.713 | 1.13 | 23.8 | 81 | 1269 | -- | -- |
| 314.57 | 0.826 | 4.74 | 2.88 | 1.08 | -1.61 | 0.734 | -- | 1.12 | 23.8 | 80.49 | 1244 | -- | -- |
| 315.64 | 0.827 | 4.73 | 2.93 | 1.09 | -1.67 | -- | 1.03 | 1.13 | 23.8 | 81 | 1233 | -- | -- |
| 316.93 | 0.829 | 4.75 | 2.84 | 1.08 | -1.58 | -- | -- | 1.11 | 23.8 | 80.74 | 1237 | -- | -- |
| 363.55 | 0.888 | 4.71 | 2.88 | -- | -1.45 | -- | 0.743 | 1.14 | -- | 82.99 | 1511 | -- | -- |
| 371.78 | 0.904 | 4.73 | 2.6 | 0.825 | -- | 0.499 | -- | 1.17 | 23.3 | -- | -- | -- | -- |
| 372.85 | 0.904 | 4.73 | 2.58 | 0.822 | -- | -- | -- | 1.17 | 23.4 | -- | -- | -- | -- |
| 364.35 | 0.889 | 4.72 | 2.81 | -- | -1.38 | -- | -- | 1.13 | -- | 82.61 | 1513 | -- | -- |
| 511.51 | 1.05 | 4.81 | -- | 1.45 | -1.59 | -- | -- | 0.9 | 22.6 | 102.3 | 847 | -- | -- |
| 415.22 | 0.952 | 4.71 | 2.6 | -- | -- | -- | -- | 1.18 | -- | -- | -- | -- | -- |
| 548.5 | 1.1 | 4.8 | -- | 0.85 | -- | -- | -- | 0.881 | 23.6 | -- | -- | -- | -- |
| 549.15 | 1.09 | 4.78 | -- | -- | -1.3 | -- | -- | 0.898 | -- | 109.7 | 1568 | -- | -- |
| 593.94 | 1.14 | 4.78 | -- | -- | -- | -- | -- | 0.888 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 310.89 | humidity | 50 | 720 | > th | dose dependent | rect. | 14 | 8 |
| 2 | 311.17 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 5 |
| 3 | 311.43 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 7 |
| 8 | 312.02 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 5 |
| 9 | 312.14 | humidity | 90 | 1440 | < th | dose dependent | rect. | 12 | 2 |
| 18 | 312.70 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 7 |
| 22 | 312.74 | humidity | 50 | 1440 | > th | dose dependent | rect. | 12 | 2 |
| 41 | 313.43 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 6 |
| 60 | 313.80 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 62 | 313.86 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 15 |
| 63 | 313.86 | humidity | 50 | 720 | > th | dose dependent | sin | 17 | NA |
| 66 | 313.90 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 9 |
| 72 | 314.07 | humidity | 50 | 720 | > th | dose dependent | rect. | 11 | 11 |
| 76 | 314.12 | humidity | 90 | 1440 | < th | dose dependent | rect. | 15 | 1 |
| 92 | 314.37 | humidity | 90 | 720 | < th | dose dependent | rect. | 15 | 6 |
| 100 | 314.44 | humidity | 70 | 720 | > th | dose independent | sin | 13 | NA |
| 116 | 314.70 | humidity | 70 | 1440 | < th | dose dependent | rect. | 15 | 1 |
| 137 | 314.88 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 141 | 314.93 | humidity | 50 | 720 | > th | dose dependent | rect. | 11 | 15 |
| 170 | 315.27 | humidity | 50 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 181 | 315.41 | humidity | 80 | 1440 | < th | dose dependent | sin | 19 | NA |
| 224 | 315.76 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 6 |
| 225 | 315.77 | humidity | 70 | 720 | < th | dose independent | sin | 13 | NA |
| 234 | 315.83 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 274 | 316.17 | humidity | 70 | 720 | < th | dose independent | rect. | 15 | 17 |
| 279 | 316.22 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 288 | 316.29 | humidity | 80 | 720 | < th | dose dependent | sin | 15 | NA |
| 296 | 316.35 | humidity | 70 | 720 | < th | dose independent | rect. | 15 | 5 |
| 324 | 316.45 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 15 |
| 332 | 316.49 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 12 |
| 337 | 316.52 | humidity | 70 | 720 | < th | dose independent | rect. | 17 | 2 |
| 403 | 316.87 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 18 |
| 409 | 316.90 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 15 |
| 474 | 317.26 | humidity | 50 | 720 | > th | dose dependent | rect. | 11 | 19 |
| 485 | 317.34 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 3 |
| 540 | 317.54 | humidity | 80 | 1440 | > th | dose independent | sin | 1 | NA |
| 545 | 317.57 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 9 |
| 555 | 317.63 | radiation | 10 | 1440 | < th | dose dependent | sin | 18 | NA |
| 580 | 317.76 | humidity | 80 | 1440 | < th | dose independent | sin | 1 | NA |
| 591 | 317.81 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 19 |
| 632 | 318.00 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 3 |
| 770 | 318.37 | humidity | 80 | 1440 | < th | dose dependent | no | NA | NA |
| 784 | 318.47 | humidity | 60 | 1440 | > th | dose independent | rect. | 14 | 3 |
| 810 | 318.62 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 11 |
| 812 | 318.63 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 911 | 318.97 | humidity | 80 | 1440 | < th | dose dependent | rect. | 17 | 23 |