BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0576500 Os05g0576500|J075151M10
(63 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G25310.1 | chr4:12949753-12951138 FORWARD LENGTH=354 50 3e-07
AT1G28030.1 | chr1:9771793-9773345 FORWARD LENGTH=323 49 5e-07
AT1G52800.1 | chr1:19664044-19665362 FORWARD LENGTH=315 49 7e-07
AT2G36690.1 | chr2:15379930-15381987 FORWARD LENGTH=367 49 7e-07
AT1G30040.1 | chr1:10537769-10539570 FORWARD LENGTH=342 47 3e-06
AT4G03050.2 | chr4:1344332-1346127 FORWARD LENGTH=362 47 3e-06
AT4G21200.1 | chr4:11302751-11306601 FORWARD LENGTH=339 46 4e-06
AT4G10490.1 | chr4:6483900-6485179 FORWARD LENGTH=349 45 6e-06
AT4G03070.1 | chr4:1358442-1359620 FORWARD LENGTH=323 45 7e-06
>AT4G25310.1 | chr4:12949753-12951138 FORWARD LENGTH=354
Length = 353
Score = 49.7 bits (117), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/51 (45%), Positives = 36/51 (70%), Gaps = 2/51 (3%)
Query: 6 FSPHQDTNWLSIVCQ-NEVNGNEMQTRDGEWVLVEPSPTSLIVNVGNALRV 55
+PH D L+I+ Q NEV G +++ +DG+WV V+P P +L+VNVG+ L +
Sbjct: 225 LTPHSDATGLTILLQVNEVEGLQIK-KDGKWVSVKPLPNALVVNVGDILEI 274
>AT1G28030.1 | chr1:9771793-9773345 FORWARD LENGTH=323
Length = 322
Score = 48.9 bits (115), Expect = 5e-07, Method: Composition-based stats.
Identities = 26/53 (49%), Positives = 39/53 (73%), Gaps = 3/53 (5%)
Query: 6 FSPHQDTNWLSIVCQNE-VNGNEMQTRDG-EWVLVEPS-PTSLIVNVGNALRV 55
F PH D ++L+I+CQN+ V+G E++T+DG EW+ V+PS +S IV G +L V
Sbjct: 189 FYPHIDRHFLTILCQNDAVDGLEIKTKDGEEWIKVKPSQASSFIVMAGASLHV 241
>AT1G52800.1 | chr1:19664044-19665362 FORWARD LENGTH=315
Length = 314
Score = 48.5 bits (114), Expect = 7e-07, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 32/46 (69%)
Query: 6 FSPHQDTNWLSIVCQNEVNGNEMQTRDGEWVLVEPSPTSLIVNVGN 51
F H D +LSI+ QN+VNG E++++DGEW+ ++ P S +V G+
Sbjct: 186 FPQHTDKTFLSILHQNDVNGLEVKSKDGEWISLQLPPKSYVVMAGD 231
>AT2G36690.1 | chr2:15379930-15381987 FORWARD LENGTH=367
Length = 366
Score = 48.5 bits (114), Expect = 7e-07, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 8 PHQDTNWLSIVCQNEVNGNEMQTRDGEWVLVEPSPTSLIVNVGNALRV 55
PH D +L+++ Q+EV G ++ RD EWV V+P P S +VNVG+ L +
Sbjct: 238 PHSDYGFLTLLLQDEVEGLQILYRD-EWVTVDPIPGSFVVNVGDHLEI 284
>AT1G30040.1 | chr1:10537769-10539570 FORWARD LENGTH=342
Length = 341
Score = 46.6 bits (109), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 32/55 (58%)
Query: 1 MVHMQFSPHQDTNWLSIVCQNEVNGNEMQTRDGEWVLVEPSPTSLIVNVGNALRV 55
MV + F H D +S++ N G ++ +DG WV V P +S +NVG+AL+V
Sbjct: 199 MVKVGFGEHTDPQIISVLRSNNTAGLQICVKDGSWVAVPPDHSSFFINVGDALQV 253
>AT4G03050.2 | chr4:1344332-1346127 FORWARD LENGTH=362
Length = 361
Score = 46.6 bits (109), Expect = 3e-06, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 34/45 (75%)
Query: 9 HQDTNWLSIVCQNEVNGNEMQTRDGEWVLVEPSPTSLIVNVGNAL 53
H D + I+ Q++++G E++T++G+W+ V+P+P ++IV G+AL
Sbjct: 229 HTDKSLTGIIYQHQIDGLEVKTKEGKWIRVKPAPNTVIVIAGDAL 273
>AT4G21200.1 | chr4:11302751-11306601 FORWARD LENGTH=339
Length = 338
Score = 46.2 bits (108), Expect = 4e-06, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 8 PHQDTNWLSIVCQNEVNGNEMQTRDGEWVLVEPSPTSLIVNVGN 51
PH D+++L+I+ Q++V G ++ +D W+ V+P+P +LI+N+G+
Sbjct: 214 PHTDSDFLTILYQDQVGGLQL-IKDNRWIAVKPNPKALIINIGD 256
>AT4G10490.1 | chr4:6483900-6485179 FORWARD LENGTH=349
Length = 348
Score = 45.4 bits (106), Expect = 6e-06, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 35/47 (74%), Gaps = 1/47 (2%)
Query: 9 HQDTNWLSIVCQNEVNGNEMQTRDGEWVLVEPSPTSLIVNVGNALRV 55
H+D N ++++ Q+EV+G ++ +DG+W+ V P P + IVN+G+ ++V
Sbjct: 219 HKDANLITVLLQDEVSGLQV-FKDGKWIAVNPVPNTFIVNLGDQMQV 264
>AT4G03070.1 | chr4:1358442-1359620 FORWARD LENGTH=323
Length = 322
Score = 45.1 bits (105), Expect = 7e-06, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 34/45 (75%)
Query: 9 HQDTNWLSIVCQNEVNGNEMQTRDGEWVLVEPSPTSLIVNVGNAL 53
H D N ++I+ Q +V+G E++T+D +W+ V+PS S++V VG++L
Sbjct: 195 HTDKNIITILHQYQVDGLEVKTKDDKWIKVKPSQDSVLVMVGDSL 239
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.127 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,410,115
Number of extensions: 43351
Number of successful extensions: 178
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 208
Number of HSP's successfully gapped: 10
Length of query: 63
Length of database: 11,106,569
Length adjustment: 36
Effective length of query: 27
Effective length of database: 10,119,593
Effective search space: 273229011
Effective search space used: 273229011
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 104 (44.7 bits)