Os05g0570700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os05g0570700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 87.73 | 0.44 | 9.88 | 0.0901 | 1.01 | 0.642 | 1 | 0.925 | 0.847 | 16.8 | 64.4 | 5603 | -- | -- |
| 89.02 | 0.439 | 9.89 | 0.0868 | 1.01 | 0.662 | 1.02 | -- | 0.841 | 16.8 | 64.63 | 5616 | -- | -- |
| 90.3 | 0.443 | 9.88 | 0.0938 | 1.01 | 0.652 | -- | 0.971 | 0.852 | 16.9 | 64.58 | 5602 | -- | -- |
| 91.34 | 0.445 | 9.89 | 0.0452 | 1 | 0.676 | -- | -- | 0.871 | 16.8 | 66.02 | 5652 | -- | -- |
| 144.37 | 0.56 | 9.88 | 0.0292 | -- | 0.762 | -- | 0.994 | 0.815 | -- | 64 | 5599 | -- | -- |
| 96.03 | 0.459 | 9.87 | 0.123 | 1.03 | -- | 1.07 | -- | 0.911 | 16.7 | -- | -- | -- | -- |
| 99 | 0.466 | 9.87 | 0.128 | 1.04 | -- | -- | -- | 0.917 | 16.8 | -- | -- | -- | -- |
| 145.79 | 0.562 | 9.89 | 0.0485 | -- | 0.833 | -- | -- | 0.812 | -- | 65.02 | 5563 | -- | -- |
| 91.34 | 0.445 | 9.87 | -- | 1.01 | 0.713 | -- | -- | 0.875 | 16.9 | 66.41 | 5631 | -- | -- |
| 156.46 | 0.584 | 9.86 | 0.0894 | -- | -- | -- | -- | 0.89 | -- | -- | -- | -- | -- |
| 99.43 | 0.466 | 9.87 | -- | 1.04 | -- | -- | -- | 0.902 | 16.8 | -- | -- | -- | -- |
| 145.54 | 0.562 | 9.86 | -- | -- | 0.823 | -- | -- | 0.848 | -- | 66.02 | 5596 | -- | -- |
| 156.67 | 0.584 | 9.86 | -- | -- | -- | -- | -- | 0.88 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 85.68 | humidity | 50 | 14400 | > th | dose independent | rect. | 15 | 21 |
| 2 | 85.98 | humidity | 70 | 14400 | < th | dose dependent | rect. | 20 | 15 |
| 3 | 85.99 | humidity | 60 | 14400 | < th | dose independent | rect. | 7 | 6 |
| 15 | 86.00 | humidity | 60 | 14400 | < th | dose independent | sin | 8 | NA |
| 17 | 86.01 | humidity | 70 | 14400 | < th | dose dependent | rect. | 7 | 4 |
| 34 | 86.08 | humidity | 60 | 14400 | > th | dose independent | sin | 9 | NA |
| 35 | 86.11 | humidity | 60 | 14400 | < th | dose dependent | rect. | 15 | 22 |
| 42 | 86.19 | humidity | 60 | 14400 | < th | dose dependent | rect. | 12 | 23 |
| 43 | 86.20 | humidity | 60 | 14400 | > th | dose independent | rect. | 7 | 5 |
| 45 | 86.20 | humidity | 60 | 14400 | > th | dose independent | rect. | 24 | 12 |
| 58 | 86.22 | humidity | 60 | 14400 | > th | dose independent | rect. | 18 | 18 |
| 60 | 86.23 | humidity | 60 | 14400 | < th | dose dependent | sin | 19 | NA |
| 67 | 86.24 | humidity | 60 | 14400 | < th | dose dependent | rect. | 10 | 9 |
| 98 | 86.26 | humidity | 70 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 143 | 86.27 | humidity | 60 | 14400 | < th | dose dependent | no | NA | NA |
| 240 | 86.28 | humidity | 50 | 14400 | < th | dose independent | rect. | 15 | 21 |
| 241 | 86.28 | humidity | 70 | 14400 | < th | dose dependent | sin | 9 | NA |
| 276 | 86.38 | humidity | 50 | 14400 | > th | dose independent | sin | 13 | NA |
| 278 | 86.38 | humidity | 50 | 14400 | > th | dose independent | rect. | 14 | 3 |
| 281 | 86.39 | humidity | 60 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 300 | 86.42 | humidity | 50 | 14400 | > th | dose independent | rect. | 14 | 13 |
| 305 | 86.43 | humidity | 60 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 319 | 86.44 | humidity | 50 | 14400 | > th | dose independent | rect. | 14 | 11 |
| 361 | 86.51 | humidity | 60 | 14400 | < th | dose dependent | rect. | 12 | 3 |
| 391 | 86.59 | wind | 9 | 43200 | > th | dose dependent | rect. | 11 | 2 |
| 459 | 86.75 | wind | 9 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 504 | 86.86 | humidity | 50 | 14400 | < th | dose independent | sin | 13 | NA |
| 525 | 86.90 | radiation | 40 | 43200 | > th | dose independent | rect. | 13 | 19 |
| 527 | 86.91 | radiation | 40 | 43200 | > th | dose independent | rect. | 13 | 3 |
| 613 | 87.11 | humidity | 50 | 14400 | < th | dose independent | rect. | 14 | 4 |
| 724 | 87.35 | wind | 9 | 43200 | < th | dose independent | rect. | 11 | 2 |
| 751 | 87.40 | humidity | 50 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 758 | 87.43 | radiation | 10 | 43200 | < th | dose dependent | rect. | 6 | 5 |
| 763 | 87.45 | humidity | 60 | 14400 | < th | dose independent | no | NA | NA |
| 922 | 87.59 | radiation | 40 | 43200 | > th | dose independent | sin | 14 | NA |
| 924 | 87.59 | wind | 9 | 43200 | > th | dose independent | rect. | 11 | 5 |
| 941 | 87.61 | wind | 9 | 43200 | < th | dose independent | rect. | 11 | 5 |