BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0570700 Os05g0570700|Os05g0570700
(421 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G65850.1 | chr5:26346317-26347495 FORWARD LENGTH=393 59 4e-09
AT5G52610.1 | chr5:21346423-21347478 REVERSE LENGTH=352 57 2e-08
AT3G57580.1 | chr3:21320800-21322026 REVERSE LENGTH=409 56 4e-08
AT1G53790.2 | chr1:20079558-20081394 REVERSE LENGTH=462 52 5e-07
AT1G47765.1 | chr1:17574906-17576092 REVERSE LENGTH=386 51 1e-06
AT3G57590.1 | chr3:21330182-21331396 REVERSE LENGTH=405 50 2e-06
AT3G49450.1 | chr3:18337305-18338498 REVERSE LENGTH=398 50 2e-06
AT1G61060.1 | chr1:22488548-22489711 REVERSE LENGTH=268 49 5e-06
>AT5G65850.1 | chr5:26346317-26347495 FORWARD LENGTH=393
Length = 392
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 110/269 (40%), Gaps = 44/269 (16%)
Query: 17 EILLRAPTKDVARSCCVSTQWRGIVRDPSFRKLHHDRHAVPSKDDVPDALLVITVNADGQ 76
EILLR P K +A CVS W ++ F +L R + L+ DG
Sbjct: 42 EILLRLPAKSIATCRCVSKLWISVICRQDFTELFLTR-------SLHRPQLLFCCKKDGN 94
Query: 77 SVSTVVPAMVSPVSTSQRAPMYRVIKN-GISYSLANVCNGFLCF--ASWSRAKVVVCNPI 133
P + +P S + KN + Y ++ NG +CF + V+CNP
Sbjct: 95 LFFFSSPQLQNPYENSSAISL----KNFSLCYKISRPVNGLICFKRKEMNETVTVICNPS 150
Query: 134 TGEKLAIPR--APPIGPDYKSSRARFVLGFSPTTHVYK-LFRFADRRIDVYTLPTSGEAG 190
TG L++P+ IGP +RF + + P +K L + V TL T G
Sbjct: 151 TGHTLSLPKPMKTSIGP------SRFFV-YEPIQKQFKVLLSYKSDEHQVLTLGT----G 199
Query: 191 GGGWRQLPLLYPCTVVETTPSVVVGGKICVMTATGTPSWHPPEIPTLGPVLVV--DVASE 248
WR + C++ P ++ +IC+ ++P + G ++V DV SE
Sbjct: 200 ELSWR----IIECSM----PHILGMSEICINGVL----YYPAINLSSGDYIIVCFDVRSE 247
Query: 249 KHRMYSPPDNGCPAADETSFTAFELHGRL 277
K R + + AA + + + +G+L
Sbjct: 248 KFRFITVMEEFIKAAHDGTLINY--NGKL 274
>AT5G52610.1 | chr5:21346423-21347478 REVERSE LENGTH=352
Length = 351
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 95/215 (44%), Gaps = 37/215 (17%)
Query: 12 DELWREILLRAPTKDVARSCCVSTQWRGIVRDPSFRKLHHDRHAVPSKDDVPDALLVITV 71
++L EILLR P K +AR CV W I+R F L+ R + + V AL I
Sbjct: 4 EDLLVEILLRLPVKPLARCLCVCKLWATIIRSRYFINLYQSRSST-RQPYVMFALRDIFT 62
Query: 72 NADGQSVSTVVPAMVSPVSTSQRAPMYRVIKNGISYSLANVCNGFLCFASWSRAKVVVCN 131
+ S+ P++V+ + S N S++ + NG +C S ++ + N
Sbjct: 63 SCRWHFFSSSQPSLVTKATCS---------ANNSSHT-PDCVNGLICVEYMS--QLWISN 110
Query: 132 PITGEKLAIPRAPPIGPDYKSSRARFVLGFSPTTHVYKLFRFADR------RIDVYTLPT 185
P T + + +P++ P ++ +G+ P + YK+ F+ + +++V+TL
Sbjct: 111 PATRKGVLVPQSAP-----HQKFRKWYMGYDPINYQYKVLFFSKQYLLSPYKLEVFTLE- 164
Query: 186 SGEAGGGGWRQLPLLYPCTVVETTPSVVVGGKICV 220
G G W+ + VE PS G IC+
Sbjct: 165 ----GQGSWKMIE-------VENIPSPSTRG-ICI 187
>AT3G57580.1 | chr3:21320800-21322026 REVERSE LENGTH=409
Length = 408
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 80/202 (39%), Gaps = 24/202 (11%)
Query: 13 ELWREILLRAPTKDVARSCCVSTQWRGIVRDPSFRKLHHDRHAVPSKDDVPDALLVITVN 72
+L REI R P+K VAR +S QW I+R F KL R + + P L +
Sbjct: 13 DLIREIFARLPSKSVARFRTLSKQWASILRSTDFTKLFLSRSS-----NRPRLLFAVERY 67
Query: 73 ADGQSVSTVVPAMVSPVSTSQRAPMYRVIKNGISYSLANVCNGFLCFAS---WSRAKVVV 129
+ P + S + +S+ + + +G L F + +V+
Sbjct: 68 KCNEWQFFSSPQSQNRYEKSAHLEFHSKFSGDVSHYICSYASGLLYFPAVHIVDTETIVI 127
Query: 130 CNPITGEKLAIPRAPPIGPDYKSSRARFVLGFSPTTHVYKLFRFADRRIDVYTLPTSGEA 189
CNPITG +P K R+R L F P +K F D + + T G +
Sbjct: 128 CNPITGMYTGLPVI------MKDRRSRGFLVFDPVDKRFKAF-------DTHFILTLG-S 173
Query: 190 GGGGWRQLPLLYPCTVVETTPS 211
G WR+ + PC + E S
Sbjct: 174 GELKWREKNI--PCPLYERCSS 193
>AT1G53790.2 | chr1:20079558-20081394 REVERSE LENGTH=462
Length = 461
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 77/173 (44%), Gaps = 17/173 (9%)
Query: 5 CGETISVDELWREILLRAPTKDVARSCCVSTQWRGIVRDPSFRKLHHDRHAVPSKDDVPD 64
C I +D L +I R P K +AR CVS W I+ P F++L ++ P
Sbjct: 78 CFRYIPID-LLMDIFSRVPAKSIARFRCVSKLWESILCRPDFKELFMTMSSIR-----PP 131
Query: 65 ALLVITVNADGQ--SVSTVVPAMVSPVSTSQRAPMYRVIKNGISYS-LANVCNGFLC-FA 120
LL + DG S+ P + +TS Y V S+S + + GF+C
Sbjct: 132 LLLFTFQDDDGNLFFFSSPHPQIPCNENTSLVPTRYHVQHTTDSFSEIGSPLCGFICRRG 191
Query: 121 SWSRAKVVVCNPITGEKLAIPRAPPIGPDYKS--SRARFVLGFSPTTHVYKLF 171
+ +V+CNP+TGE +++P+ + KS + R LG+ P K+
Sbjct: 192 KRNLDTMVICNPVTGESVSLPKV-----ELKSINTETRPYLGYDPVRKQLKVL 239
>AT1G47765.1 | chr1:17574906-17576092 REVERSE LENGTH=386
Length = 385
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 99/243 (40%), Gaps = 29/243 (11%)
Query: 13 ELWREILLRAPTKDVARSCCVSTQWRGIVRDPSFRKLHHDRHAVPSKDDVPDALLVITVN 72
+L EILLR P K +AR CVS W I DP F L R PS LLV +
Sbjct: 29 DLTSEILLRLPEKSIARFRCVSKLWLSITTDPYFINLFETRSPRPS-------LLVCFIE 81
Query: 73 ADGQSVSTVVPAMVSPVSTSQRAPMYRVIKNGISYSLANVCNGFLCFASWSRAKV-VVCN 131
D VS+ +P + + S+R+ + I ++ G +CF + +K+ +V N
Sbjct: 82 NDKLFVSS-IPQHLHSLQNSKRSYSSSQLFIVIIWNYQKDV-GLICFKT---SKMPIVWN 136
Query: 132 PITGEKLAIPRAPPIGPDYKSSRARFVLGFSPTTHVYKLFRFADRR-IDVYTLPTSGEAG 190
P + + +P P + LG+ P +K+ RR DV + T G A
Sbjct: 137 PSKRQLITLP-----IPRLSWNNIIVFLGYDPVEGKHKVMCLPFRRSSDVCQVLTLGPAQ 191
Query: 191 GGGWRQLPLLYP-CTVVETTPSVVVGGKICVMTATGTPSWHPPEIPTLGPVLVVDVASEK 249
W + + C+ +++ + G + T +W ++ DV SEK
Sbjct: 192 EFSWITVKTYHKHCSDYQSSGRCIKGVVYYIAQVYHTHAW---------VLMCFDVRSEK 242
Query: 250 HRM 252
M
Sbjct: 243 FDM 245
>AT3G57590.1 | chr3:21330182-21331396 REVERSE LENGTH=405
Length = 404
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 105/268 (39%), Gaps = 41/268 (15%)
Query: 12 DELWREILLRAPTKDVARSCCVSTQWRGIVRDPSFRKLHHDRHAVPSKDDVPDALLVITV 71
++L EI R P K V +S W ++R P F +L R + + L+
Sbjct: 6 NDLILEIFSRLPAKSVIGFRTLSKHWASMLRSPVFTELFLTRSSNRPR-------LLFAA 58
Query: 72 NADGQSVSTVVPAMVSPVSTSQRAPMYRVIKNGISYSLANVCNGFLCFAS-W--SRAKVV 128
+G+ + P + S + +S + + +G LCF W A V
Sbjct: 59 ERNGEWLFFSSPQPQNRYEKSSHLDYHTKFSGDVSRFICSYVSGLLCFPDLWLSKDASPV 118
Query: 129 VCNPITGEKLAIPRAPPIGPDYKSSRARFVLGFSPTTHVYKL----FRFADRRI--DVYT 182
+CNP TG ++P + AR LGF P +K+ + F+D+R ++ T
Sbjct: 119 ICNPTTGMYESLPDL------MRYKNARGFLGFDPIGKQFKVLSEAYPFSDQREHHEILT 172
Query: 183 LPTSGEAGGGGWRQLPLLYPCTVVETTPSVVVGGKICVMTAT-GTPSWHPPEIPTLGPVL 241
L T + WR + P + + + G + + T G PS ++
Sbjct: 173 LGTEELS----WRSNIISCPAYDRSLSEGICINGVLYYLAQTLGVPS---------CVII 219
Query: 242 VVDVASEKHRMYSPPDNGC--PAADETS 267
DV SE+ + + D GC D+TS
Sbjct: 220 CFDVRSEEFKYF---DAGCFNDQLDDTS 244
>AT3G49450.1 | chr3:18337305-18338498 REVERSE LENGTH=398
Length = 397
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 84/205 (40%), Gaps = 39/205 (19%)
Query: 13 ELWREILLRAPTKDVARSCCVSTQWRGIVRDPSFRKLHHDRHAVPSKDDVPDALLVITVN 72
+L EIL R P K AR CVS W ++R P L R + L+IT
Sbjct: 35 DLMVEILSRVPAKSAARFRCVSNDWNSLLRSPYLTNLFLKRSSARPH-------LLITFQ 87
Query: 73 ADGQSVSTVVPAMVSPVSTSQRAPMYRVIKNGISYSLAN---VCNGFLCFAS-W--SR-- 124
A+G+ P + S + + YS VC G +C ++ W SR
Sbjct: 88 AEGKWSFFSSPEYLISDQNSNLVVVDNHMDVPKDYSFGVCVPVC-GLMCTSNEWVLSRKR 146
Query: 125 -AKVVVCNPITGEKLAIPRAPPIGPDYKSSRARFV--LGFSPTTHVYKL---------FR 172
A++++CNP TG+ ++P+ +S R + +G++P YK+ F+
Sbjct: 147 DARMMICNPSTGQFKSLPKV-------RSCRGNVITYIGYNPIEKQYKVLCMTIREKPFK 199
Query: 173 FADRRIDVYTLPTSGEAGGGGWRQL 197
F V TL T G WR L
Sbjct: 200 FKAEEHQVLTLGT----GKLKWRML 220
>AT1G61060.1 | chr1:22488548-22489711 REVERSE LENGTH=268
Length = 267
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 66/163 (40%), Gaps = 13/163 (7%)
Query: 7 ETISVDELWREILLRAPTKDVARSCCVSTQWRGIVRDPSFRKLHHDRHAVPSKDDVPDAL 66
+ I VD +IL + P K +A+ CVS W +R P + L P P +
Sbjct: 18 DAIHVDLFTAKILSKLPVKSIAQCRCVSKLWSSQIRRPYYNML------FPIMSPAPPRI 71
Query: 67 LVITVNADGQSVSTVVPAMVSPVSTSQRAPMYRVIKNGISYSLANVCNGFLCFA----SW 122
L NA+G T +TS A ++ + G LC ++
Sbjct: 72 LFTIENAEGLFFYTSPQPRNPDENTSLVATLHHRTSGNSLLITSPPVGGLLCLEHDRKNY 131
Query: 123 SRAKVVVCNPITGEKLAIP--RAPPIGPDYKSSRARFVLGFSP 163
SR +V+ NPITGE LA+P R I + ++ G+ P
Sbjct: 132 SRV-LVISNPITGEFLALPKLRINEIKKELLYLNETYIFGYDP 173
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.136 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,721,448
Number of extensions: 411720
Number of successful extensions: 1173
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 1184
Number of HSP's successfully gapped: 9
Length of query: 421
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 320
Effective length of database: 8,337,553
Effective search space: 2668016960
Effective search space used: 2668016960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 113 (48.1 bits)