Os05g0569800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF783 family protein.
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Os05g0569800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF783 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52.41 | 0.34 | 8.72 | 2.19 | 1.02 | -0.33 | -0.29 | -0.218 | 0.0875 | 20 | 29.62 | 4279 | -- | -- |
| 52.36 | 0.337 | 8.71 | 2.24 | 1.02 | -0.362 | -0.292 | -- | 0.114 | 20 | 29.4 | 4248 | -- | -- |
| 52.57 | 0.338 | 8.71 | 2.18 | 1.02 | -0.329 | -- | -0.345 | 0.105 | 20 | 29.21 | 4247 | -- | -- |
| 52.6 | 0.338 | 8.71 | 2.24 | 1.02 | -0.361 | -- | -- | 0.118 | 20 | 29.2 | 4247 | -- | -- |
| 108.14 | 0.484 | 8.68 | 2.21 | -- | -0.307 | -- | 0.0941 | 0.0574 | -- | 30.3 | 5755 | -- | -- |
| 56.68 | 0.353 | 8.7 | 2.14 | 1.01 | -- | -0.29 | -- | 0.119 | 19.9 | -- | -- | -- | -- |
| 56.92 | 0.353 | 8.7 | 2.15 | 1.01 | -- | -- | -- | 0.119 | 19.9 | -- | -- | -- | -- |
| 108.15 | 0.484 | 8.69 | 2.23 | -- | -0.293 | -- | -- | 0.0638 | -- | 30.2 | 5759 | -- | -- |
| 97.57 | 0.46 | 8.85 | -- | 0.853 | 1.39 | -- | -- | -0.502 | 20.9 | 18.5 | 47520 | -- | -- |
| 112.87 | 0.496 | 8.68 | 2.14 | -- | -- | -- | -- | 0.105 | -- | -- | -- | -- | -- |
| 178.52 | 0.625 | 8.76 | -- | 1 | -- | -- | -- | -0.121 | 20 | -- | -- | -- | -- |
| 147.45 | 0.566 | 8.81 | -- | -- | 1.47 | -- | -- | -0.484 | -- | 18.46 | 47520 | -- | -- |
| 233.28 | 0.713 | 8.73 | -- | -- | -- | -- | -- | -0.132 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.45 | radiation | 1 | 43200 | < th | dose dependent | rect. | 20 | 4 |
| 2 | 51.54 | radiation | 20 | 10 | > th | dose independent | rect. | 8 | 1 |
| 3 | 51.66 | temperature | 20 | 30 | > th | dose independent | rect. | 4 | 19 |
| 6 | 51.78 | wind | 1 | 1440 | < th | dose dependent | rect. | 4 | 4 |
| 7 | 51.83 | radiation | 10 | 4320 | < th | dose dependent | rect. | 18 | 12 |
| 8 | 51.84 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 5 |
| 11 | 51.85 | radiation | 40 | 4320 | < th | dose dependent | rect. | 1 | 5 |
| 17 | 51.87 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 35 | 51.99 | wind | 1 | 4320 | < th | dose independent | rect. | 4 | 2 |
| 39 | 52.00 | wind | 1 | 4320 | > th | dose independent | rect. | 4 | 2 |
| 43 | 52.01 | wind | 1 | 1440 | < th | dose dependent | rect. | 6 | 1 |
| 46 | 52.02 | wind | 1 | 1440 | < th | dose independent | rect. | 4 | 4 |
| 67 | 52.09 | temperature | 20 | 10 | < th | dose independent | rect. | 5 | 22 |
| 73 | 52.12 | radiation | 1 | 4320 | > th | dose dependent | rect. | 18 | 12 |
| 79 | 52.16 | wind | 1 | 1440 | > th | dose independent | rect. | 4 | 4 |
| 84 | 52.17 | radiation | 1 | 4320 | > th | dose dependent | rect. | 4 | 2 |
| 94 | 52.18 | radiation | 1 | 4320 | > th | dose independent | rect. | 4 | 2 |
| 111 | 52.21 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 112 | 52.21 | radiation | 1 | 4320 | < th | dose independent | rect. | 24 | 6 |
| 122 | 52.24 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 124 | 52.24 | radiation | 1 | 4320 | < th | dose independent | rect. | 19 | 11 |
| 130 | 52.25 | radiation | 10 | 4320 | > th | dose dependent | rect. | 16 | 15 |
| 135 | 52.27 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 2 |
| 145 | 52.27 | temperature | 30 | 4320 | < th | dose independent | rect. | 1 | 9 |
| 160 | 52.28 | temperature | 25 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 167 | 52.29 | temperature | 30 | 4320 | < th | dose independent | rect. | 19 | 15 |
| 185 | 52.34 | temperature | 20 | 30 | < th | dose independent | rect. | 23 | 21 |
| 189 | 52.35 | temperature | 30 | 4320 | > th | dose independent | sin | 8 | NA |
| 191 | 52.35 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 209 | 52.35 | temperature | 30 | 4320 | > th | dose independent | rect. | 18 | 18 |
| 216 | 52.36 | temperature | 30 | 4320 | < th | dose independent | sin | 8 | NA |
| 248 | 52.37 | wind | 1 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 302 | 52.40 | wind | 1 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 324 | 52.42 | temperature | 15 | 30 | > th | dose dependent | rect. | 4 | 19 |
| 335 | 52.43 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 8 |
| 372 | 52.43 | temperature | 30 | 4320 | > th | dose independent | rect. | 18 | 21 |
| 518 | 52.45 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 21 |
| 543 | 52.46 | temperature | 30 | 4320 | < th | dose independent | rect. | 15 | 21 |
| 547 | 52.46 | radiation | 1 | 43200 | < th | dose dependent | rect. | 1 | 2 |
| 553 | 52.46 | temperature | 25 | 4320 | > th | dose dependent | rect. | 16 | 17 |
| 570 | 52.48 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 573 | 52.48 | radiation | 30 | 4320 | > th | dose independent | rect. | 15 | 17 |
| 592 | 52.49 | temperature | 30 | 4320 | > th | dose independent | no | NA | NA |
| 594 | 52.49 | temperature | 30 | 4320 | < th | dose independent | no | NA | NA |
| 668 | 52.49 | temperature | 30 | 4320 | < th | dose independent | rect. | 7 | 18 |
| 840 | 52.50 | temperature | 30 | 4320 | > th | dose independent | rect. | 11 | 23 |
| 843 | 52.50 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 23 |
| 850 | 52.51 | humidity | 60 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 864 | 52.51 | temperature | 30 | 4320 | > th | dose dependent | sin | 8 | NA |
| 941 | 52.53 | wind | 1 | 4320 | < th | dose dependent | rect. | 4 | 1 |
| 942 | 52.53 | radiation | 10 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 986 | 52.54 | temperature | 20 | 30 | > th | dose independent | rect. | 11 | 22 |
| 992 | 52.54 | radiation | 20 | 10 | > th | dose dependent | rect. | 8 | 1 |
| 996 | 52.54 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 16 |