BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0569800 Os05g0569800|AK063413
         (243 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G02950.1  | chr3:665631-666439 REVERSE LENGTH=237              248   2e-66
AT5G16790.1  | chr5:5522642-5523475 REVERSE LENGTH=234            243   5e-65

>AT3G02950.1 | chr3:665631-666439 REVERSE LENGTH=237
          Length = 236

 Score =  248 bits (633), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 130/245 (53%), Positives = 175/245 (71%), Gaps = 11/245 (4%)

Query: 1   MLAKGRKVAGRGGDM--SAHYAFGLQEDDAIIKXXXXXXXXXXXGEPPLKKLQKKFMSFA 58
           M  K R+++GR   +    +YAF   +DD II+           GEPPLKKLQKKF SF 
Sbjct: 1   MSVKARRISGRLETVVTKVNYAFDPVDDDKIIRNRLLTRTTTTRGEPPLKKLQKKFTSFV 60

Query: 59  TEVEKDADNISDCERLYKAFLQEINAFVLPLLKSKAVVDANLREKESFNELQDEIQRQIL 118
            EV+K+ +N +DC RL KAFLQE++ F +PLLKS+AVV+ANLREKESFNE++DE +RQI+
Sbjct: 61  LEVDKEEENYNDCGRLAKAFLQELSTFEIPLLKSQAVVEANLREKESFNEVKDETERQIM 120

Query: 119 QAQTDIEELKKKLEQSRIERLYKEECEAIRKMISLQPPRSETEKLIAGLEKEIANLEAEN 178
           QA+ +IE+LKK+LE+S+I+R +KEECE IRK+IS QPPRSETEK+I  L KEIA LEAE+
Sbjct: 121 QAKAEIEDLKKQLEESKIDRQHKEECETIRKLISAQPPRSETEKVIYELNKEIAELEAES 180

Query: 179 TACIRTXXXXXXXXXXXXHVVEELQISIEDEQRSIADELRAGAEEQQNMSTDEGSGDASD 238
           TA  R             HVV+ELQ ++EDEQ+S+ DE+R+ +E+Q+N+         +D
Sbjct: 181 TASWRLLELRKKQFALLMHVVDELQNTMEDEQKSLVDEIRSASEDQRNI---------TD 231

Query: 239 AMALD 243
           AM++D
Sbjct: 232 AMSVD 236



>AT5G16790.1 | chr5:5522642-5523475 REVERSE LENGTH=234
          Length = 233

 Score =  243 bits (621), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 131/238 (55%), Positives = 169/238 (71%), Gaps = 11/238 (4%)

Query: 6   RKVAGRGGDMSAHYAFGLQEDDAIIKXXXXXXXXXXXGEPPLKKLQKKFMSFATEVEKDA 65
           R V+GR   ++A+YAF    DD II+           GEPPLKKLQKKF SF  E++K+ 
Sbjct: 7   RIVSGRSETVAANYAFDPLHDDKIIRNRLLTRTTTTRGEPPLKKLQKKFTSFVIELDKEE 66

Query: 66  DNISDCERLYKAFLQEINAFVLPLLKSKAVVDANLREKESFNELQDEIQRQILQAQTDIE 125
           DN S+C RL KAFLQE++AF +PLLKS+ VV ANLREKE+FNEL+DE  RQI+QAQ DIE
Sbjct: 67  DNYSECGRLAKAFLQELSAFEIPLLKSQVVVAANLREKENFNELKDETNRQIMQAQADIE 126

Query: 126 ELKKKLEQSRIERLYKEECEAIRKMISLQPPRSETEKLIAGLEKEIANLEAENTACIRTX 185
           +LKK+LE+S+IER  KEECEAIRK+IS QPPRSET+K+I  L+KEIA LEAENTA  R  
Sbjct: 127 DLKKQLEESKIERQQKEECEAIRKLISAQPPRSETQKVIHELKKEIAELEAENTASWRLL 186

Query: 186 XXXXXXXXXXXHVVEELQISIEDEQRSIADELRAGAEEQQNMSTDEGSGDASDAMALD 243
                      HVV+ELQ ++EDEQ+S+ +E+      Q+N+     + D ++AM++D
Sbjct: 187 ELRKKQFALLLHVVDELQETMEDEQKSMVEEM------QRNI-----TADGAEAMSID 233



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.311    0.129    0.339 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,369,645
Number of extensions: 160502
Number of successful extensions: 894
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 900
Number of HSP's successfully gapped: 2
Length of query: 243
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 147
Effective length of database: 8,474,633
Effective search space: 1245771051
Effective search space used: 1245771051
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 110 (47.0 bits)