Os05g0566800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cold acclimation protein COR413-TM1.
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Os05g0566800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cold acclimation protein COR413-TM1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 132.02 | 0.54 | 11 | -0.326 | 3.09 | -4.3 | -0.821 | 3.39 | -0.467 | 6.16 | 0.4547 | 726 | -- | -- |
| 133.69 | 0.539 | 10.9 | -0.283 | 3.49 | -4.82 | 1.92 | -- | -0.441 | 6.2 | 0.41 | 733 | -- | -- |
| 132.38 | 0.536 | 11 | -0.291 | 3 | -4.19 | -- | 2.65 | -0.443 | 6.21 | 0.4666 | 730 | -- | -- |
| 141.57 | 0.554 | 10.9 | -0.238 | 3.43 | -4.71 | -- | -- | -0.438 | 6.18 | 0.44 | 731 | -- | -- |
| 147.03 | 0.565 | 11 | -0.378 | -- | -1.6 | -- | 2.18 | -0.486 | -- | 0.17 | 3159 | -- | -- |
| 182.94 | 0.634 | 11 | 0.216 | 0.487 | -- | -0.451 | -- | -0.255 | 15 | -- | -- | -- | -- |
| 183.47 | 0.634 | 11 | 0.206 | 0.483 | -- | -- | -- | -0.258 | 14.6 | -- | -- | -- | -- |
| 141.88 | 0.555 | 11 | -0.463 | -- | -2.61 | -- | -- | -0.357 | -- | 0.1704 | 1546 | -- | -- |
| 142.8 | 0.557 | 10.9 | -- | 3.23 | -4.45 | -- | -- | -0.407 | 6.16 | 0.4606 | 726 | -- | -- |
| 197.16 | 0.656 | 11 | 0.185 | -- | -- | -- | -- | -0.27 | -- | -- | -- | -- | -- |
| 184.58 | 0.636 | 11 | -- | 0.479 | -- | -- | -- | -0.281 | 14.6 | -- | -- | -- | -- |
| 140.72 | 0.552 | 11 | -- | -- | -2.1 | -- | -- | -0.444 | -- | 0.17 | 1549 | -- | -- |
| 198.06 | 0.657 | 11 | -- | -- | -- | -- | -- | -0.291 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 123.94 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 14 |
| 2 | 125.51 | radiation | 1 | 720 | < th | dose dependent | rect. | 21 | 22 |
| 5 | 127.63 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 5 |
| 8 | 127.92 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 5 |
| 12 | 128.68 | humidity | 80 | 1440 | < th | dose independent | rect. | 3 | 14 |
| 13 | 128.72 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 10 |
| 14 | 128.75 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 7 |
| 30 | 129.22 | humidity | 80 | 1440 | < th | dose independent | rect. | 24 | 17 |
| 31 | 129.24 | humidity | 80 | 1440 | > th | dose independent | rect. | 3 | 14 |
| 34 | 129.33 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 10 |
| 36 | 129.34 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 54 | 129.73 | humidity | 80 | 1440 | < th | dose independent | sin | 2 | NA |
| 57 | 129.74 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 21 |
| 70 | 130.08 | humidity | 70 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 80 | 130.27 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 82 | 130.29 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 12 |
| 88 | 130.34 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 16 |
| 95 | 130.41 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 14 |
| 101 | 130.46 | humidity | 70 | 720 | > th | dose dependent | rect. | 9 | 19 |
| 115 | 130.59 | humidity | 80 | 1440 | > th | dose independent | sin | 1 | NA |
| 136 | 130.85 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 16 |
| 137 | 130.86 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 14 |
| 146 | 130.93 | radiation | 1 | 1440 | < th | dose dependent | sin | 19 | NA |
| 152 | 130.99 | humidity | 70 | 1440 | > th | dose dependent | rect. | 9 | 7 |
| 163 | 131.10 | humidity | 70 | 720 | > th | dose dependent | rect. | 9 | 12 |
| 168 | 131.16 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 5 |
| 175 | 131.26 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 9 |
| 179 | 131.35 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 12 |
| 182 | 131.38 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 7 |
| 192 | 131.45 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 11 |
| 197 | 131.48 | radiation | 1 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 224 | 131.66 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 12 |
| 228 | 131.67 | humidity | 70 | 720 | > th | dose dependent | rect. | 9 | 14 |
| 238 | 131.71 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 16 |
| 247 | 131.79 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 19 |
| 259 | 131.88 | radiation | 1 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 261 | 131.90 | radiation | 1 | 1440 | > th | dose independent | rect. | 15 | 2 |
| 275 | 132.04 | humidity | 70 | 720 | > th | dose dependent | sin | 20 | NA |
| 284 | 132.09 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 11 |
| 324 | 132.31 | radiation | 1 | 1440 | < th | dose independent | sin | 20 | NA |
| 348 | 132.36 | radiation | 1 | 720 | < th | dose independent | rect. | 21 | 22 |
| 392 | 132.68 | radiation | 1 | 1440 | > th | dose independent | sin | 20 | NA |
| 422 | 132.92 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 7 |
| 431 | 132.99 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 11 |
| 436 | 133.04 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 16 |
| 440 | 133.07 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 15 |
| 445 | 133.11 | radiation | 1 | 1440 | < th | dose independent | rect. | 15 | 5 |
| 465 | 133.21 | radiation | 1 | 1440 | < th | dose independent | rect. | 15 | 9 |
| 474 | 133.26 | wind | 7 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 483 | 133.31 | radiation | 1 | 1440 | < th | dose independent | rect. | 15 | 13 |
| 494 | 133.36 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 6 |
| 510 | 133.41 | radiation | 1 | 720 | < th | dose dependent | no | NA | NA |
| 512 | 133.42 | wind | 5 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 521 | 133.49 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 532 | 133.53 | radiation | 1 | 1440 | > th | dose independent | rect. | 15 | 4 |
| 545 | 133.58 | wind | 7 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 562 | 133.65 | radiation | 1 | 720 | < th | dose dependent | sin | 2 | NA |
| 801 | 134.76 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 23 |
| 822 | 134.91 | humidity | 70 | 720 | > th | dose dependent | rect. | 24 | 23 |
| 824 | 134.92 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 871 | 135.25 | radiation | 1 | 4320 | > th | dose independent | rect. | 4 | 1 |
| 882 | 135.25 | radiation | 1 | 4320 | > th | dose dependent | rect. | 4 | 1 |
| 894 | 135.29 | radiation | 10 | 4320 | < th | dose independent | rect. | 22 | 7 |
| 907 | 135.38 | humidity | 70 | 1440 | > th | dose dependent | sin | 0 | NA |
| 933 | 135.57 | humidity | 70 | 720 | > th | dose dependent | rect. | 22 | 23 |
| 946 | 135.67 | radiation | 10 | 4320 | < th | dose independent | rect. | 19 | 10 |
| 951 | 135.69 | humidity | 70 | 1440 | > th | dose dependent | rect. | 3 | 14 |
| 963 | 135.80 | humidity | 80 | 720 | > th | dose independent | sin | 20 | NA |