BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0566800 Os05g0566800|AK065748
(222 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G29390.1 | chr1:10286409-10287878 REVERSE LENGTH=227 166 9e-42
AT1G29395.1 | chr1:10288345-10289539 REVERSE LENGTH=226 166 1e-41
AT3G50830.1 | chr3:18894109-18895355 REVERSE LENGTH=204 57 8e-09
AT4G37220.1 | chr4:17515106-17515969 FORWARD LENGTH=203 55 3e-08
>AT1G29390.1 | chr1:10286409-10287878 REVERSE LENGTH=227
Length = 226
Score = 166 bits (420), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 80/152 (52%), Positives = 104/152 (68%)
Query: 70 VCHSSAHLSARTMQWVSAGATAVLLLAKGTAIHKSFLVPLFALLAPCSVISWIKSDYGQW 129
VC+++ LS +QW+S + L+ A+GT IHKSF+VPLFAL AP ++SW+K +YG W
Sbjct: 74 VCYATPMLSVHNLQWISTISCVALMFARGTGIHKSFVVPLFALQAPMGIVSWMKGEYGIW 133
Query: 130 TAFLALLVRLFFSIPGELELPLSTMLLVSVAPYQLMNLRGTQXXXXXXXXXXXXXXFQHF 189
AFLALL RLFFS P ELELP +LLV VAPYQ+M++RG Q FQHF
Sbjct: 134 AAFLALLTRLFFSFPVELELPFIALLLVIVAPYQVMSIRGKQEGAILSLAISCFLAFQHF 193
Query: 190 TRVGGLGKAFDQGSIIATLAIICITVIPLMML 221
+R G L KAFDQ S++AT+AII +TV+ + L
Sbjct: 194 SRAGTLQKAFDQNSVLATVAIIGVTVVSFLFL 225
>AT1G29395.1 | chr1:10288345-10289539 REVERSE LENGTH=226
Length = 225
Score = 166 bits (419), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 79/147 (53%), Positives = 107/147 (72%), Gaps = 1/147 (0%)
Query: 70 VCHSSAHLSARTMQWVSAGATAVLLLAKGTAIHKSFLVPLFALLAPCSVISWIKSDYGQW 129
VC++ A +SA ++QW+S + L+LA+GT IHKS +VPLFAL AP S+++WIK +YG W
Sbjct: 74 VCYA-APISANSLQWISTISCLALMLARGTGIHKSVVVPLFALHAPSSIVAWIKGEYGVW 132
Query: 130 TAFLALLVRLFFSIPGELELPLSTMLLVSVAPYQLMNLRGTQXXXXXXXXXXXXXXFQHF 189
AFLAL+ RLFF+ PGELELP +LLV VAPYQ+MN+RG Q FQHF
Sbjct: 133 AAFLALIARLFFTFPGELELPFIALLLVIVAPYQVMNIRGKQEGAIIAIAISGFLAFQHF 192
Query: 190 TRVGGLGKAFDQGSIIATLAIICITVI 216
+R G L KA+++GS++AT+AII +TV+
Sbjct: 193 SRAGSLEKAYEKGSVLATVAIIGVTVV 219
>AT3G50830.1 | chr3:18894109-18895355 REVERSE LENGTH=204
Length = 203
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 4/124 (3%)
Query: 99 TAIHKSFLVPLFALLAPCSVISWIKSDYGQWTAFLALLVRLFF--SIPGELELPLSTMLL 156
T + S L+P L P + +++ D G+W AF+A+++RLFF P LE+P S +LL
Sbjct: 72 TKMLTSLLIPYIFLSLPSVIFNFLSGDVGKWIAFVAVVLRLFFPKHFPDWLEMPGSLILL 131
Query: 157 VSVAPYQLM-NLRGTQXXXXXXXXXXXXXXFQHFTRVGGLGKAFDQ-GSIIATLAIICIT 214
+ V+P+ L ++RGT +H GG +F Q + TL II +
Sbjct: 132 LVVSPHFLAHHIRGTWIGTVISLFIGCYLLQEHIRASGGFRNSFTQPRGVSNTLGIILLL 191
Query: 215 VIPL 218
V P+
Sbjct: 192 VYPV 195
>AT4G37220.1 | chr4:17515106-17515969 FORWARD LENGTH=203
Length = 202
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 72/149 (48%), Gaps = 8/149 (5%)
Query: 82 MQWV-SAGATAVLLLAK---GTAIHKSFLVPLFALLAPCSVISWIKSDYGQWTAFLALLV 137
+QW S A +L+L + T + + LVP P + + D+G+W A +A++V
Sbjct: 50 LQWAASIFAIYLLILDRTNWKTKMLTTLLVPYIFFTLPSVIFQFFSGDFGKWIALIAIIV 109
Query: 138 RLFF--SIPGELELPLSTMLLVSVAPYQL-MNLRGTQXXXXXXXXXXXXXXFQHFTRVGG 194
RLFF P LE+P++ +L+V V+P + LR + +H GG
Sbjct: 110 RLFFPKEFPEWLEIPVALILIVVVSPSLIAWTLRESWVGAVICLVIACYLFHEHIKASGG 169
Query: 195 LGKAFDQGSIIA-TLAIICITVIPLMMLF 222
+F Q + I+ T+ I+ + V P+ +F
Sbjct: 170 FKNSFTQKNGISNTIGIVALLVYPVWTIF 198
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.328 0.138 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,867,201
Number of extensions: 82043
Number of successful extensions: 168
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 5
Length of query: 222
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 127
Effective length of database: 8,502,049
Effective search space: 1079760223
Effective search space used: 1079760223
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 110 (47.0 bits)