Os05g0565900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to WRKY transcription factor 49.
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Os05g0565900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to WRKY transcription factor 49.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 274.46 | 0.778 | 7.68 | 2.22 | 2.39 | -2.29 | 0.236 | -1.49 | 0.502 | 22.8 | 30.33 | 1233 | -- | -- |
| 274.54 | 0.772 | 7.66 | 2.46 | 2.4 | -2.46 | 0.252 | -- | 0.487 | 22.8 | 30.38 | 1215 | -- | -- |
| 274.59 | 0.772 | 7.68 | 2.19 | 2.4 | -2.29 | -- | -1.57 | 0.506 | 22.8 | 30.54 | 1215 | -- | -- |
| 274.73 | 0.772 | 7.65 | 2.45 | 2.4 | -2.46 | -- | -- | 0.506 | 22.8 | 30.46 | 1219 | -- | -- |
| 568.92 | 1.11 | 7.44 | 2.92 | -- | -2.49 | -- | 0.97 | 1.09 | -- | 28.21 | 5873 | -- | -- |
| 567.16 | 1.12 | 7.54 | 1.81 | 2.11 | -- | -0.195 | -- | 0.979 | 22.4 | -- | -- | -- | -- |
| 567.31 | 1.12 | 7.54 | 1.82 | 2.12 | -- | -- | -- | 0.979 | 22.4 | -- | -- | -- | -- |
| 569.99 | 1.11 | 7.5 | 2.6 | -- | -2.42 | -- | -- | 0.928 | -- | 28.51 | 5911 | -- | -- |
| 425.97 | 0.961 | 7.67 | -- | 2.4 | -2.13 | -- | -- | 0.418 | 22.7 | 31.86 | 1132 | -- | -- |
| 840.73 | 1.35 | 7.48 | 1.85 | -- | -- | -- | -- | 0.986 | -- | -- | -- | -- | -- |
| 654.57 | 1.2 | 7.58 | -- | 2.13 | -- | -- | -- | 0.777 | 22.4 | -- | -- | -- | -- |
| 707.25 | 1.24 | 7.48 | -- | -- | -1.93 | -- | -- | 0.956 | -- | 32.6 | 7298 | -- | -- |
| 931.4 | 1.42 | 7.53 | -- | -- | -- | -- | -- | 0.781 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 271.83 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 4 |
| 2 | 272.20 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 23 | 279.06 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 18 |
| 27 | 279.74 | temperature | 30 | 1440 | > th | dose dependent | rect. | 13 | 6 |
| 44 | 280.34 | temperature | 30 | 1440 | > th | dose dependent | sin | 16 | NA |
| 175 | 283.63 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 301 | 284.63 | temperature | 30 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 402 | 287.45 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 584 | 292.08 | temperature | 25 | 1440 | > th | dose dependent | rect. | 4 | 4 |
| 640 | 294.64 | radiation | 20 | 1440 | < th | dose dependent | rect. | 17 | 13 |
| 647 | 295.18 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 3 |
| 692 | 296.35 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 20 |
| 693 | 296.36 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 6 |
| 696 | 296.40 | temperature | 30 | 1440 | > th | dose independent | sin | 12 | NA |
| 699 | 296.44 | temperature | 30 | 1440 | < th | dose independent | sin | 12 | NA |
| 700 | 296.45 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 16 |
| 704 | 296.53 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 11 |
| 707 | 296.55 | radiation | 20 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 711 | 296.60 | radiation | 20 | 1440 | < th | dose dependent | rect. | 17 | 10 |
| 724 | 296.91 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 21 |
| 729 | 296.98 | radiation | 20 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 782 | 297.81 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 20 |
| 786 | 297.97 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 13 |
| 789 | 297.97 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 794 | 298.00 | radiation | 1 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 798 | 298.06 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 18 |
| 814 | 298.28 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 21 |
| 843 | 298.59 | radiation | 1 | 1440 | > th | dose dependent | rect. | 17 | 13 |
| 872 | 299.23 | radiation | 30 | 1440 | > th | dose independent | rect. | 7 | 1 |
| 888 | 299.32 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 918 | 299.64 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 3 |
| 954 | 300.47 | temperature | 30 | 1440 | < th | dose independent | rect. | 1 | 21 |
| 967 | 300.52 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 16 |
| 969 | 300.52 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 18 |