Os05g0565200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Urease accessory protein G.
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Os05g0565200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Urease accessory protein G.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.06 | 0.282 | 10.1 | -0.192 | 0.257 | 1.81 | -0.761 | -1.39 | -0.042 | 22.6 | 19.1 | 257 | -- | -- |
| 37.18 | 0.284 | 10.1 | 0.0488 | 0.233 | 1.84 | -0.793 | -- | 0.0393 | 21.6 | 17.24 | 280 | -- | -- |
| 38.42 | 0.289 | 10.1 | -0.157 | 0.255 | 1.8 | -- | -1.3 | -0.0305 | 22.6 | 19.2 | 256 | -- | -- |
| 39.42 | 0.292 | 10.1 | 0.0748 | 0.296 | 1.83 | -- | -- | 0.0296 | 22.6 | 18.01 | 234 | -- | -- |
| 39.19 | 0.292 | 10.1 | -0.202 | -- | 1.98 | -- | -1.24 | -0.0623 | -- | 16.9 | 421 | -- | -- |
| 87.72 | 0.439 | 10 | 0.507 | 0.691 | -- | -0.3 | -- | 0.333 | 18.2 | -- | -- | -- | -- |
| 87.92 | 0.439 | 10 | 0.511 | 0.69 | -- | -- | -- | 0.332 | 18.1 | -- | -- | -- | -- |
| 40.51 | 0.296 | 10.1 | 0.0428 | -- | 2 | -- | -- | 0.0131 | -- | 16.3 | 402 | -- | -- |
| 39.52 | 0.293 | 10.1 | -- | 0.273 | 1.95 | -- | -- | 0.0143 | 22.6 | 16.9 | 251 | -- | -- |
| 112.58 | 0.496 | 10 | 0.491 | -- | -- | -- | -- | 0.317 | -- | -- | -- | -- | -- |
| 94.81 | 0.455 | 10 | -- | 0.682 | -- | -- | -- | 0.276 | 18.1 | -- | -- | -- | -- |
| 40.56 | 0.297 | 10.1 | -- | -- | 2.02 | -- | -- | 0.00663 | -- | 16.2 | 402 | -- | -- |
| 118.95 | 0.509 | 10 | -- | -- | -- | -- | -- | 0.262 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.00 | temperature | 15 | 720 | > th | dose dependent | rect. | 20 | 17 |
| 4 | 32.38 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 17 |
| 6 | 32.55 | temperature | 15 | 720 | > th | dose dependent | sin | 8 | NA |
| 30 | 33.19 | temperature | 30 | 720 | < th | dose dependent | sin | 8 | NA |
| 79 | 34.24 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 171 | 36.30 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 178 | 36.42 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 179 | 36.45 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 193 | 36.58 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 196 | 36.59 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 23 |
| 235 | 36.97 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 248 | 37.12 | temperature | 20 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 341 | 38.08 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 23 |
| 403 | 38.55 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 23 |
| 478 | 39.05 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 3 |
| 489 | 39.07 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 5 |
| 498 | 39.09 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 3 |
| 748 | 39.75 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |