BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0565200 Os05g0565200|AK067090
         (284 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G34470.2  | chr2:14530900-14532411 REVERSE LENGTH=277          456   e-129

>AT2G34470.2 | chr2:14530900-14532411 REVERSE LENGTH=277
          Length = 276

 Score =  456 bits (1174), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 219/247 (88%), Positives = 236/247 (95%)

Query: 38  WVGEDGRVWHSHDGLAPHSHEPIYSPGDFSKRAPPLISRRFAERAFTVGIGGPVGTGKTA 97
           WVG+DG+V+HSHDGLAPHSHEPIYSPG FS+RAPPL  R F+ERAFTVGIGGPVGTGKTA
Sbjct: 30  WVGKDGKVYHSHDGLAPHSHEPIYSPGYFSRRAPPLHDRNFSERAFTVGIGGPVGTGKTA 89

Query: 98  LMLALCRSLREKYSLAAVTNDIFTKEDGEFLIKHGALPEERIRAVETGGCPHAAIREDIS 157
           LMLALCR LR+KYSLAAVTNDIFTKEDGEFL+K+GALPEERIRAVETGGCPHAAIREDIS
Sbjct: 90  LMLALCRFLRDKYSLAAVTNDIFTKEDGEFLVKNGALPEERIRAVETGGCPHAAIREDIS 149

Query: 158 INLGPLEELSNLCKADLLLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGIT 217
           INLGPLEELSNL KADLLLCESGGDNLAANFSRELADYIIYIIDVS GDKIPRKGGPGIT
Sbjct: 150 INLGPLEELSNLFKADLLLCESGGDNLAANFSRELADYIIYIIDVSAGDKIPRKGGPGIT 209

Query: 218 QADLLIINKTDLAPAVGADLAVMERDALRMREGGPFVFAQVKHGVGVEEIVNHILQAWEI 277
           QADLL+INKTDLA AVGADL+VMERD+LRMR+GGPFVFAQVKHG+GVEEIVNH++ +WE 
Sbjct: 210 QADLLVINKTDLAAAVGADLSVMERDSLRMRDGGPFVFAQVKHGLGVEEIVNHVMHSWEH 269

Query: 278 ATGNKRR 284
           ATG KR+
Sbjct: 270 ATGKKRQ 276



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.139    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,784,658
Number of extensions: 244794
Number of successful extensions: 735
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 735
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 187
Effective length of database: 8,447,217
Effective search space: 1579629579
Effective search space used: 1579629579
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)