Os05g0561500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to CMP-KDO synthetase (EC 2.7.7.38) (Fragment).
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Os05g0561500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to CMP-KDO synthetase (EC 2.7.7.38) (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.07 | 0.262 | 11.1 | 0.9 | 0.471 | 0.433 | 0.59 | -0.301 | 0.559 | 6.86 | 4.108 | 90 | -- | -- |
| 31.42 | 0.261 | 11.1 | 0.903 | 0.459 | 0.476 | 0.763 | -- | 0.537 | 7.42 | 3.67 | 100 | -- | -- |
| 31.87 | 0.263 | 11.1 | 0.911 | 0.487 | 0.458 | -- | -0.397 | 0.561 | 7.08 | 3.95 | 85 | -- | -- |
| 32.8 | 0.267 | 11.1 | 0.909 | 0.482 | 0.46 | -- | -- | 0.559 | 7.1 | 3.672 | 85 | -- | -- |
| 35.77 | 0.279 | 11.1 | 0.937 | -- | 0.668 | -- | 0.116 | 0.562 | -- | 4.108 | 506 | -- | -- |
| 35.67 | 0.28 | 11.1 | 0.901 | 0.662 | -- | 0.0673 | -- | 0.525 | 3.58 | -- | -- | -- | -- |
| 35.68 | 0.28 | 11.1 | 0.899 | 0.662 | -- | -- | -- | 0.524 | 3.56 | -- | -- | -- | -- |
| 35.78 | 0.279 | 11.1 | 0.918 | -- | 0.675 | -- | -- | 0.558 | -- | 6.29 | 505 | -- | -- |
| 54.49 | 0.344 | 11.1 | -- | 0.504 | 0.385 | -- | -- | 0.48 | 6.13 | 8.322 | 60 | -- | -- |
| 60.1 | 0.362 | 11.1 | 0.927 | -- | -- | -- | -- | 0.542 | -- | -- | -- | -- | -- |
| 57 | 0.353 | 11.1 | -- | 0.679 | -- | -- | -- | 0.424 | 3.55 | -- | -- | -- | -- |
| 57.13 | 0.352 | 11.1 | -- | -- | 0.692 | -- | -- | 0.464 | -- | 10 | 488 | -- | -- |
| 82.78 | 0.425 | 11.1 | -- | -- | -- | -- | -- | 0.439 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.05 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 10 |
| 7 | 28.58 | temperature | 20 | 90 | > th | dose independent | rect. | 19 | 10 |
| 18 | 29.12 | temperature | 15 | 10 | > th | dose dependent | rect. | 20 | 10 |
| 27 | 29.30 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 4 |
| 32 | 29.42 | atmosphere | 1010 | 720 | < th | dose independent | rect. | 17 | 10 |
| 40 | 29.52 | atmosphere | 1010 | 720 | < th | dose independent | rect. | 9 | 16 |
| 41 | 29.54 | temperature | 15 | 270 | > th | dose dependent | sin | 12 | NA |
| 45 | 29.57 | atmosphere | 1010 | 30 | < th | dose independent | sin | 9 | NA |
| 46 | 29.57 | atmosphere | 1010 | 720 | < th | dose independent | rect. | 9 | 14 |
| 49 | 29.60 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 10 |
| 71 | 29.72 | atmosphere | 1010 | 720 | < th | dose independent | rect. | 9 | 12 |
| 86 | 29.80 | atmosphere | 1010 | 720 | < th | dose independent | sin | 16 | NA |
| 134 | 29.96 | temperature | 20 | 270 | > th | dose independent | sin | 14 | NA |
| 138 | 29.96 | temperature | 15 | 720 | > th | dose dependent | sin | 16 | NA |
| 150 | 29.99 | atmosphere | 1010 | 90 | < th | dose independent | rect. | 19 | 10 |
| 157 | 30.01 | atmosphere | 1010 | 720 | < th | dose independent | rect. | 13 | 14 |
| 178 | 30.06 | temperature | 15 | 720 | > th | dose dependent | rect. | 9 | 18 |
| 225 | 30.18 | atmosphere | 1010 | 720 | < th | dose independent | rect. | 17 | 4 |
| 241 | 30.21 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 4 |
| 326 | 30.37 | temperature | 20 | 270 | > th | dose independent | rect. | 11 | 16 |
| 356 | 30.42 | atmosphere | 1010 | 10 | < th | dose independent | rect. | 20 | 11 |
| 387 | 30.45 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 6 |
| 393 | 30.46 | temperature | 15 | 720 | > th | dose independent | rect. | 9 | 12 |
| 434 | 30.51 | atmosphere | 1005 | 720 | > th | dose independent | rect. | 19 | 10 |
| 436 | 30.51 | temperature | 20 | 720 | > th | dose independent | rect. | 13 | 13 |
| 449 | 30.52 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 463 | 30.54 | atmosphere | 1005 | 720 | > th | dose independent | rect. | 20 | 8 |
| 503 | 30.59 | atmosphere | 1000 | 10 | > th | dose dependent | sin | 6 | NA |
| 545 | 30.63 | atmosphere | 1005 | 720 | > th | dose independent | rect. | 21 | 5 |
| 553 | 30.63 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 14 |
| 578 | 30.66 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 8 |
| 598 | 30.68 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 10 |
| 632 | 30.72 | atmosphere | 1005 | 720 | > th | dose independent | sin | 12 | NA |
| 633 | 30.72 | humidity | 80 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 638 | 30.72 | radiation | 20 | 30 | < th | dose dependent | sin | 10 | NA |
| 670 | 30.74 | humidity | 80 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 679 | 30.75 | temperature | 20 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 696 | 30.76 | temperature | 20 | 90 | > th | dose independent | rect. | 9 | 20 |
| 705 | 30.77 | atmosphere | 995 | 270 | > th | dose dependent | sin | 9 | NA |
| 707 | 30.77 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 9 |
| 713 | 30.79 | atmosphere | 1005 | 270 | > th | dose independent | sin | 8 | NA |
| 722 | 30.79 | atmosphere | 1000 | 270 | > th | dose dependent | rect. | 22 | 11 |
| 790 | 30.86 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 795 | 30.86 | radiation | 10 | 90 | < th | dose dependent | rect. | 19 | 19 |
| 825 | 30.88 | temperature | 30 | 720 | < th | dose dependent | rect. | 14 | 17 |
| 827 | 30.89 | temperature | 20 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 837 | 30.89 | temperature | 25 | 270 | < th | dose dependent | rect. | 17 | 17 |
| 878 | 30.92 | radiation | 10 | 90 | < th | dose dependent | rect. | 19 | 15 |
| 889 | 30.93 | radiation | 10 | 90 | < th | dose dependent | rect. | 19 | 22 |
| 915 | 30.96 | atmosphere | 1010 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 922 | 30.96 | atmosphere | 1010 | 10 | < th | dose independent | rect. | 9 | 23 |
| 924 | 30.96 | wind | 1 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 937 | 30.97 | radiation | 1 | 90 | < th | dose independent | rect. | 19 | 20 |
| 938 | 30.97 | radiation | 1 | 90 | < th | dose independent | rect. | 19 | 22 |
| 939 | 30.97 | temperature | 30 | 270 | < th | dose dependent | sin | 10 | NA |
| 940 | 30.97 | temperature | 25 | 90 | < th | dose dependent | sin | 15 | NA |
| 952 | 30.98 | temperature | 20 | 14400 | > th | dose independent | rect. | 20 | 5 |
| 980 | 31.00 | wind | 1 | 14400 | > th | dose independent | rect. | 1 | 2 |
| 981 | 31.00 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 6 |
| 994 | 31.01 | temperature | 20 | 14400 | < th | dose independent | rect. | 20 | 6 |
| 1000 | 31.01 | temperature | 20 | 10 | > th | dose independent | rect. | 9 | 21 |