BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0561500 Os05g0561500|AK061788
         (297 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G53000.1  | chr1:19745330-19747133 REVERSE LENGTH=291          401   e-112

>AT1G53000.1 | chr1:19745330-19747133 REVERSE LENGTH=291
          Length = 290

 Score =  401 bits (1031), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 191/253 (75%), Positives = 209/253 (82%)

Query: 44  RPGGFRGRAVGIIPARFASSRFEGKPLAPILGKPMIQRTWERVMLASSLDHVVVATDDER 103
           R   FR R VGIIPAR+ASSRFEGKPL  ILGKPMIQRTWER  LA++LDH+VVATDDER
Sbjct: 37  RSKKFRSRVVGIIPARYASSRFEGKPLVQILGKPMIQRTWERSKLATTLDHIVVATDDER 96

Query: 104 IAECCRGFGADVIMTSESCRNGSERCCEALQKLNKHYDIVVNIQGDEPLIEPEIIDGVVM 163
           IAECCRGFGADVIMTSESCRNG+ERC EAL+KL K YD+VVNIQGDEPLIEPEIIDGVV 
Sbjct: 97  IAECCRGFGADVIMTSESCRNGTERCNEALEKLEKKYDVVVNIQGDEPLIEPEIIDGVVK 156

Query: 164 ALQRAPDAVFSTAVTALKPEDASDTNRVKCVLDNQGYAIYFSRGLIPFNKSGKVNPQFPY 223
           ALQ  PDAVFSTAVT+LKPED  D NRVKCV+DN+GYAIYFSRGLIP+NKSGKVNP FPY
Sbjct: 157 ALQVTPDAVFSTAVTSLKPEDGLDPNRVKCVVDNRGYAIYFSRGLIPYNKSGKVNPDFPY 216

Query: 224 LLHLGIAGFDSKFLKIYXXXXXXXXXXXXXXXXXXXXXNGYRMKVIKVDHDAHGVDAPED 283
           +LHLGI  FDSKFLK+Y                     NGY+MKVIKVDH+AHGVD P+D
Sbjct: 217 MLHLGIQSFDSKFLKVYSELQPTPLQQEEDLEQLKVLENGYKMKVIKVDHEAHGVDTPDD 276

Query: 284 VEKIEALMRARNI 296
           VEKIE+LMR RN+
Sbjct: 277 VEKIESLMRERNM 289



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.140    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,827,705
Number of extensions: 220570
Number of successful extensions: 452
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 451
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 199
Effective length of database: 8,419,801
Effective search space: 1675540399
Effective search space used: 1675540399
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)