Os05g0560000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Photosystem I reaction center subunit VI, chloroplast precursor (PSI- H) (Light-harvesting complex I 11 kDa protein) (GOS5 protein).
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Os05g0560000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Photosystem I reaction center subunit VI, chloroplast precursor (PSI- H) (Light-harvesting complex I 11 kDa protein) (GOS5 protein).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.48 | 0.337 | 15.4 | -1.23 | 0.0626 | 0.647 | 0.932 | 0.814 | -0.558 | 0.169 | 20.8 | 799 | -- | -- |
| 53.24 | 0.34 | 15.4 | -1.34 | 0.0977 | 0.537 | 1.16 | -- | -0.566 | 23.4 | 21.1 | 807 | -- | -- |
| 54.64 | 0.344 | 15.4 | -1.18 | 0.0896 | 0.668 | -- | 1.19 | -0.54 | 21.2 | 20.8 | 800 | -- | -- |
| 58.65 | 0.357 | 15.4 | -1.43 | 0.109 | 0.558 | -- | -- | -0.589 | 20.7 | 20.9 | 798 | -- | -- |
| 55.06 | 0.346 | 15.4 | -1.19 | -- | 0.682 | -- | 1.18 | -0.544 | -- | 20.88 | 798 | -- | -- |
| 63.08 | 0.372 | 15.4 | -1.18 | 0.182 | -- | 1.11 | -- | -0.457 | 22.8 | -- | -- | -- | -- |
| 67.98 | 0.386 | 15.4 | -1.23 | 0.191 | -- | -- | -- | -0.459 | 21.5 | -- | -- | -- | -- |
| 59.22 | 0.358 | 15.4 | -1.45 | -- | 0.574 | -- | -- | -0.599 | -- | 20.8 | 798 | -- | -- |
| 106.05 | 0.48 | 15.4 | -- | 0.18 | 0.211 | -- | -- | -0.408 | 20.3 | 22.4 | 916 | -- | -- |
| 70.14 | 0.391 | 15.4 | -1.23 | -- | -- | -- | -- | -0.459 | -- | -- | -- | -- | -- |
| 107.69 | 0.485 | 15.4 | -- | 0.192 | -- | -- | -- | -0.322 | 21 | -- | -- | -- | -- |
| 107.29 | 0.482 | 15.4 | -- | -- | 0.224 | -- | -- | -0.392 | -- | 22.4 | 889 | -- | -- |
| 109.8 | 0.489 | 15.4 | -- | -- | -- | -- | -- | -0.323 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.44 | wind | 1 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 2 | 51.18 | wind | 1 | 14400 | < th | dose independent | rect. | 22 | 2 |
| 3 | 51.20 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 4 | 51.33 | temperature | 20 | 720 | < th | dose independent | rect. | 2 | 5 |
| 7 | 51.46 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 18 |
| 9 | 51.48 | temperature | 20 | 720 | < th | dose independent | rect. | 22 | 9 |
| 11 | 51.52 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 6 |
| 13 | 51.57 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 20 |
| 21 | 51.67 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 22 |
| 23 | 51.69 | temperature | 15 | 720 | > th | dose dependent | sin | 7 | NA |
| 25 | 51.70 | temperature | 30 | 720 | < th | dose dependent | sin | 7 | NA |
| 26 | 51.71 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 2 |
| 28 | 51.73 | temperature | 20 | 720 | > th | dose independent | sin | 6 | NA |
| 31 | 51.74 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 15 |
| 35 | 51.76 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 39 | 51.78 | temperature | 20 | 720 | < th | dose independent | sin | 8 | NA |
| 48 | 51.85 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 8 |
| 51 | 51.87 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 8 |
| 56 | 51.89 | wind | 1 | 4320 | < th | dose dependent | rect. | 10 | 3 |
| 63 | 51.94 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 68 | 51.96 | temperature | 20 | 720 | < th | dose independent | rect. | 22 | 13 |
| 86 | 52.01 | wind | 1 | 4320 | < th | dose dependent | rect. | 11 | 1 |
| 92 | 52.02 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 168 | 52.17 | temperature | 20 | 720 | < th | dose independent | rect. | 9 | 22 |
| 169 | 52.17 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 23 |
| 170 | 52.17 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 178 | 52.19 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 193 | 52.21 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 206 | 52.23 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 9 |
| 219 | 52.24 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 9 |
| 277 | 52.31 | temperature | 20 | 720 | < th | dose independent | rect. | 22 | 22 |
| 287 | 52.34 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 12 |
| 341 | 52.40 | temperature | 20 | 720 | < th | dose independent | rect. | 2 | 19 |
| 357 | 52.42 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 14 |
| 513 | 52.58 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 526 | 52.59 | temperature | 25 | 720 | < th | dose dependent | rect. | 10 | 23 |
| 635 | 52.70 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 660 | 52.73 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 775 | 52.83 | wind | 1 | 4320 | < th | dose independent | rect. | 10 | 3 |
| 813 | 52.87 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 23 |
| 857 | 52.92 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 23 |
| 907 | 52.98 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 23 |
| 926 | 53.00 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 19 |
| 933 | 53.01 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 23 |
| 934 | 53.01 | wind | 1 | 14400 | < th | dose dependent | rect. | 22 | 2 |
| 955 | 53.03 | temperature | 20 | 720 | > th | dose independent | rect. | 8 | 23 |
| 994 | 53.07 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |