BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0560000 Os05g0560000|AK061603
         (142 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G52230.1  | chr1:19454902-19455508 FORWARD LENGTH=146          161   9e-41
AT3G16140.1  | chr3:5468670-5469415 REVERSE LENGTH=146            158   1e-39

>AT1G52230.1 | chr1:19454902-19455508 FORWARD LENGTH=146
          Length = 145

 Score =  161 bits (408), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 84/143 (58%), Positives = 100/143 (69%), Gaps = 2/143 (1%)

Query: 1   MASLVAVQP-VAVKGLAGSSISGRKLAVRPSPRALCXXXXXXXXXXXXKYGEKSVYFDLE 59
            A++ AVQP  AVKGL GSS++G KL ++PS R               KYG+KSVYFDLE
Sbjct: 4   FATIAAVQPSAAVKGLGGSSLAGAKLFIKPS-RQSFKTKSTRAGAVVAKYGDKSVYFDLE 62

Query: 60  DIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAGPFTKRXXXXXXXXXXXXXXVAYVSASA 119
           D+GNTTGQWD+YGSDAPSPYNPLQSKFFETFA PFTKR              + YVSA++
Sbjct: 63  DLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSANS 122

Query: 120 SPDLLPIKKGPQLPPTPGPRGKI 142
           + D+LPIK+GPQ PP  GPRGK+
Sbjct: 123 TGDVLPIKRGPQEPPKLGPRGKL 145



>AT3G16140.1 | chr3:5468670-5469415 REVERSE LENGTH=146
          Length = 145

 Score =  158 bits (399), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 81/143 (56%), Positives = 102/143 (71%), Gaps = 2/143 (1%)

Query: 1   MASLVAVQP-VAVKGLAGSSISGRKLAVRPSPRALCXXXXXXXXXXXXKYGEKSVYFDLE 59
           +A++ AV+P  A+KGL GSS++G KL+++PS R               KYG+KSVYFDLE
Sbjct: 4   LATVAAVKPSAAIKGLGGSSLAGAKLSIKPS-RLSFKPKSIRANGVVAKYGDKSVYFDLE 62

Query: 60  DIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAGPFTKRXXXXXXXXXXXXXXVAYVSASA 119
           D+GNTTGQWD+YGSDAPSPYNPLQSKFFETFA PFTKR              + YVSA++
Sbjct: 63  DLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSATS 122

Query: 120 SPDLLPIKKGPQLPPTPGPRGKI 142
           + ++LPIK+GPQ PP  GPRGK+
Sbjct: 123 TGEVLPIKRGPQEPPKLGPRGKL 145



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.135    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,748,638
Number of extensions: 87566
Number of successful extensions: 176
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 2
Length of query: 142
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 53
Effective length of database: 8,666,545
Effective search space: 459326885
Effective search space used: 459326885
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 106 (45.4 bits)