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Os05g0554100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Ribosomal protein L7/L12 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.68 (0.0221) R2 : 0.755
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.25 (0.0559) R2dC : 0.3 R2C : 0.478
β3 : -1.9 (0.0911) R2dE : 0.261 R2E : 0.438
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.227 (0.0465) R2dN8 : 0.0165 R2N8 : 0.013
σ : 0.415
deviance : 79.42
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C
peak time of C : 13.1
E
wheather : temperature
threshold : 30.77
memory length : 299
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 0.407
open length of G : 5

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
71.68 0.398 7.66 0.524 1.29 -1.83 -0.682 -0.308 -0.156 13.3 31.6 283 0.967 4.4
71.68 0.394 7.66 0.532 1.27 -1.81 -0.68 -- -0.142 13.1 32.34 282 0.867 4.62
73.2 0.398 7.66 0.507 1.29 -1.81 -- -0.0231 -0.161 13.3 31.38 281 0.833 4.64
73.05 0.398 7.66 0.505 1.26 -1.87 -- -- -0.16 13.1 31.68 284 0.662 4.92
149.72 0.57 7.65 0.615 -- -1.76 -- 0.329 -0.0809 -- 45.95 274 0.0147 5.35
105.2 0.481 7.67 0.517 1.91 -- -0.514 -- -0.131 15 -- -- -- --
106.09 0.482 7.67 0.505 1.91 -- -- -- -0.134 15 -- -- -- --
149.46 0.569 7.65 0.635 -- -1.82 -- -- -0.0753 -- 48.36 268 0.00514 5.3
79.42 0.415 7.68 -- 1.25 -1.9 -- -- -0.227 13.1 30.77 299 0.407 5
314.6 0.829 7.68 0.424 -- -- -- -- -0.184 -- -- -- -- --
112.82 0.497 7.69 -- 1.9 -- -- -- -0.191 15 -- -- -- --
153.61 0.577 7.69 -- -- -2.23 -- -- -0.228 -- 35.99 204 0.0167 5.78
319.34 0.834 7.69 -- -- -- -- -- -0.231 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 72.67 temperature 30.0 270 < th dose dependent rect. 1 4
4 74.29 temperature 30.0 90 < th dose dependent rect. 3 5
15 76.36 wind 5.0 270 < th dose independent rect. 1 5
23 77.30 precipitation 0.1 270 < th dose independent rect. 1 5
24 77.30 precipitation 0.1 270 < th dose dependent rect. 1 5
26 77.47 humidity 50.0 270 > th dose dependent rect. 19 6
30 77.69 temperature 25.0 270 < th dose independent rect. 1 5
34 77.89 wind 1.0 270 > th dose independent rect. 1 5
44 78.22 wind 9.0 270 < th dose independent rect. 6 19
47 78.24 temperature 10.0 270 > th dose independent rect. 1 5
50 78.24 humidity 50.0 270 > th dose independent rect. 1 5
53 78.24 atmosphere 995.0 270 > th dose independent rect. 1 5
54 78.24 atmosphere 1015.0 270 < th dose independent rect. 1 5
55 78.24 radiation 20.0 270 < th dose independent rect. 1 5
58 78.24 temperature 10.0 270 > th dose independent rect. 6 19
60 78.28 temperature 25.0 90 < th dose independent rect. 3 5
62 78.37 radiation 40.0 270 < th dose dependent rect. 1 5
72 78.65 precipitation 0.1 270 < th dose independent rect. 6 19
73 78.65 precipitation 0.1 270 < th dose dependent rect. 6 19
91 78.81 precipitation 0.1 270 < th dose independent rect. 1 18
92 78.81 precipitation 0.1 270 < th dose dependent rect. 1 18
98 79.01 radiation 20.0 270 < th dose dependent rect. 24 8
135 79.35 wind 9.0 270 < th dose dependent rect. 1 5
147 79.49 temperature 10.0 270 > th dose independent rect. 19 6
148 79.49 temperature 30.0 270 < th dose independent rect. 19 6
149 79.49 humidity 50.0 270 > th dose independent rect. 19 6
151 79.49 atmosphere 995.0 270 > th dose independent rect. 19 6
152 79.49 radiation 1.0 270 < th dose independent rect. 19 6
157 79.49 temperature 10.0 270 > th dose independent rect. 1 18
158 79.49 atmosphere 1015.0 270 < th dose independent rect. 1 18
159 79.49 radiation 1.0 270 < th dose dependent rect. 19 6
164 79.50 wind 9.0 270 < th dose independent rect. 19 6
183 79.67 atmosphere 995.0 270 > th dose independent rect. 1 18
193 79.72 wind 9.0 270 < th dose dependent rect. 6 19
196 79.74 radiation 1.0 270 < th dose dependent rect. 1 11
221 79.86 wind 1.0 270 > th dose independent rect. 3 1
226 79.88 precipitation 0.1 270 < th dose independent rect. 19 6
228 79.88 precipitation 0.1 270 < th dose dependent rect. 19 6
229 79.89 wind 9.0 270 < th dose independent rect. 1 18
234 79.93 precipitation 0.1 10 < th dose independent rect. 3 5
235 79.93 wind 1.0 270 > th dose independent rect. 1 18
236 79.93 precipitation 0.1 10 < th dose dependent rect. 3 5
238 79.97 temperature 15.0 270 > th dose independent rect. 14 15
242 80.02 precipitation 0.1 270 < th dose independent rect. 14 15
243 80.02 precipitation 0.1 270 < th dose dependent rect. 14 15
244 80.03 radiation 1.0 270 < th dose independent rect. 1 10
256 80.14 wind 9.0 270 < th dose independent rect. 5 9
260 80.16 precipitation 0.1 270 < th dose independent rect. 5 9
261 80.16 precipitation 0.1 270 < th dose dependent rect. 5 9
276 80.25 temperature 10.0 270 > th dose independent rect. 5 9
277 80.25 atmosphere 995.0 270 > th dose independent rect. 5 9
278 80.25 atmosphere 1015.0 270 < th dose independent rect. 5 9
303 80.46 wind 9.0 270 < th dose independent rect. 14 15
328 80.64 radiation 40.0 270 < th dose independent rect. 14 15
344 80.72 radiation 40.0 90 < th dose dependent rect. 3 16
348 80.75 precipitation 0.1 10 < th dose independent rect. 8 19
351 80.75 precipitation 0.1 10 < th dose dependent rect. 8 19
377 80.81 radiation 40.0 90 < th dose dependent rect. 3 6
408 80.92 precipitation 0.1 90 < th dose independent rect. 3 16
411 80.92 precipitation 0.1 90 < th dose dependent rect. 3 16
427 80.94 temperature 10.0 90 > th dose independent rect. 3 16
428 80.94 atmosphere 1015.0 90 < th dose independent rect. 3 16
436 80.96 wind 9.0 270 < th dose dependent rect. 18 7
437 80.96 radiation 40.0 90 < th dose dependent rect. 3 8
463 81.04 humidity 60.0 10 > th dose dependent rect. 20 7
492 81.15 wind 9.0 10 < th dose dependent rect. 3 5
507 81.23 temperature 10.0 10 > th dose independent rect. 3 5
509 81.23 temperature 30.0 10 < th dose independent rect. 3 5
510 81.23 humidity 50.0 10 > th dose independent rect. 3 5
512 81.23 atmosphere 995.0 10 > th dose independent rect. 3 5
513 81.23 atmosphere 1015.0 10 < th dose independent rect. 3 5
515 81.23 temperature 10.0 10 > th dose independent rect. 8 19
531 81.30 wind 9.0 90 < th dose independent rect. 3 16
538 81.32 atmosphere 995.0 90 > th dose independent rect. 3 16
553 81.36 wind 1.0 270 > th dose independent rect. 13 16
572 81.45 temperature 20.0 270 > th dose independent rect. 5 20
576 81.48 atmosphere 995.0 270 > th dose independent rect. 14 15
581 81.49 atmosphere 995.0 270 > th dose dependent rect. 1 5
582 81.49 radiation 1.0 270 < th dose dependent rect. 6 19
604 81.52 wind 1.0 270 > th dose independent rect. 11 9
621 81.56 atmosphere 995.0 270 > th dose independent rect. 6 19
639 81.62 temperature 10.0 270 > th dose dependent rect. 19 6
680 81.75 humidity 50.0 270 > th dose independent rect. 5 9
693 81.80 wind 1.0 270 > th dose independent rect. 19 6
704 81.85 humidity 50.0 270 > th dose independent rect. 20 15
708 81.86 wind 9.0 270 < th dose independent rect. 20 15
719 81.89 temperature 10.0 270 > th dose independent rect. 11 9
720 81.89 atmosphere 1015.0 270 < th dose independent rect. 11 9
721 81.89 temperature 10.0 270 > th dose independent rect. 20 15
722 81.89 atmosphere 995.0 270 > th dose independent rect. 20 15
733 81.96 temperature 20.0 270 > th dose independent rect. 19 17
754 82.03 radiation 40.0 10 < th dose dependent rect. 3 17
756 82.05 precipitation 0.1 270 < th dose independent rect. 11 9
757 82.05 precipitation 0.1 270 < th dose dependent rect. 11 9
780 82.14 radiation 40.0 90 < th dose independent rect. 3 16
861 82.39 atmosphere 1015.0 270 < th dose independent rect. 6 18
884 82.47 radiation 1.0 270 < th dose dependent sin 4 NA
897 82.52 wind 9.0 270 < th dose independent rect. 11 9
935 82.63 atmosphere 995.0 270 > th dose independent rect. 11 9