BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0554100 Os05g0554100|AK073023
(198 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G70190.1 | chr1:26430616-26431242 FORWARD LENGTH=209 137 3e-33
AT3G06040.1 | chr3:1824516-1825076 REVERSE LENGTH=187 96 8e-21
AT4G36420.1 | chr4:17203718-17204257 REVERSE LENGTH=180 96 1e-20
AT4G37660.1 | chr4:17695543-17696046 FORWARD LENGTH=168 95 2e-20
AT2G03130.1 | chr2:940744-941076 FORWARD LENGTH=111 69 2e-12
AT3G27850.1 | chr3:10324905-10325468 FORWARD LENGTH=188 53 9e-08
AT3G27830.1 | chr3:10318576-10319151 FORWARD LENGTH=192 53 1e-07
>AT1G70190.1 | chr1:26430616-26431242 FORWARD LENGTH=209
Length = 208
Score = 137 bits (346), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 101/166 (60%), Gaps = 2/166 (1%)
Query: 34 IDVRKLPTDYDASTFDPTAPSRPPPSDRVWRLVEDVXXXXXXXXXXXXXXXXXXXDVP-A 92
D RKLPTDYD +TFDPT R PP+DRV+RLV+++ +
Sbjct: 44 FDQRKLPTDYDPATFDPTE-HRSPPTDRVFRLVDEISSLTLLEISELGSIIMKKKGMTEL 102
Query: 93 PPIAILNSXXXXXXXXXXXXXXXXXXXXXXXXXXEKTVFELRLEAFDAASKIKVIKEIRS 152
P +A++ EKTVFE++LE+F+A++KIK+IKE+RS
Sbjct: 103 PTVAVMKPGAGGGVGVGGGGGMVSQSGVSEEAKVEKTVFEIKLESFEASAKIKIIKELRS 162
Query: 153 FTDLGLKEAKELVEKAPAVIKGGVSKEEARTIIDKMKAVGAKVVMD 198
FTDLGLKEAK LVEK PA++K G+SKEE I++K+KA+GAKVV++
Sbjct: 163 FTDLGLKEAKALVEKTPAILKAGLSKEEGEKILEKLKALGAKVVLE 208
>AT3G06040.1 | chr3:1824516-1825076 REVERSE LENGTH=187
Length = 186
Score = 96.3 bits (238), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 60/72 (83%)
Query: 127 EKTVFELRLEAFDAASKIKVIKEIRSFTDLGLKEAKELVEKAPAVIKGGVSKEEARTIID 186
EKT F+++LE F+A+ KIKVIKE+R+FT LGLKEAKELVEK PA++K GV+KEEA II
Sbjct: 115 EKTAFDVKLEKFNASDKIKVIKEVRTFTSLGLKEAKELVEKVPAILKQGVTKEEANEIIA 174
Query: 187 KMKAVGAKVVMD 198
K+KAVG VM+
Sbjct: 175 KIKAVGGIAVME 186
>AT4G36420.1 | chr4:17203718-17204257 REVERSE LENGTH=180
Length = 179
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/68 (69%), Positives = 59/68 (86%)
Query: 131 FELRLEAFDAASKIKVIKEIRSFTDLGLKEAKELVEKAPAVIKGGVSKEEARTIIDKMKA 190
F++ L+A+DA SKIKVIKE+R+ T LGLKEAK+LVEKAP ++K GVSKEEA II+K+KA
Sbjct: 112 FDVMLQAYDAVSKIKVIKEVRTITALGLKEAKDLVEKAPTLLKKGVSKEEAEKIIEKLKA 171
Query: 191 VGAKVVMD 198
VGAKV M+
Sbjct: 172 VGAKVAME 179
>AT4G37660.1 | chr4:17695543-17696046 FORWARD LENGTH=168
Length = 167
Score = 94.7 bits (234), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/68 (67%), Positives = 60/68 (88%)
Query: 131 FELRLEAFDAASKIKVIKEIRSFTDLGLKEAKELVEKAPAVIKGGVSKEEARTIIDKMKA 190
F+++LE F+AASKIKVIKEIR+FTDLGLKEAK LVEKAP ++K G++KEEA I++K+KA
Sbjct: 100 FDVKLEKFEAASKIKVIKEIRAFTDLGLKEAKALVEKAPVIVKNGLTKEEAEKIMEKLKA 159
Query: 191 VGAKVVMD 198
VGA V ++
Sbjct: 160 VGAIVALE 167
>AT2G03130.1 | chr2:940744-941076 FORWARD LENGTH=111
Length = 110
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 57/72 (79%)
Query: 127 EKTVFELRLEAFDAASKIKVIKEIRSFTDLGLKEAKELVEKAPAVIKGGVSKEEARTIID 186
EKTVFE++LE+F+A +KIK+IKE+R +GLKEA +LV KAP V+K G+SKEE +++
Sbjct: 20 EKTVFEVKLESFEARAKIKIIKEVRRIIGVGLKEAMKLVVKAPTVLKTGLSKEEGEEVVE 79
Query: 187 KMKAVGAKVVMD 198
K+ A+GA+ V+
Sbjct: 80 KLNALGAEAVLQ 91
>AT3G27850.1 | chr3:10324905-10325468 FORWARD LENGTH=188
Length = 187
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 127 EKTVFELRLEAFDAASKIKVIKEIRSFTDLGLKEAKELVEKAPAVIKGGVSKEEARTIID 186
E+T F++ + ++S+I VIK +R+ T L LKEAKEL+E P K G++K+EA
Sbjct: 116 EQTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEEAKK 175
Query: 187 KMKAVGAKV 195
++ GAKV
Sbjct: 176 TLEEAGAKV 184
>AT3G27830.1 | chr3:10318576-10319151 FORWARD LENGTH=192
Length = 191
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 127 EKTVFELRLEAFDAASKIKVIKEIRSFTDLGLKEAKELVEKAPAVIKGGVSKEEARTIID 186
E+T F++ + ++S+I VIK +R+ T L LKEAKEL+E P K G++K+EA
Sbjct: 120 EQTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEEAKK 179
Query: 187 KMKAVGAKV 195
++ GAKV
Sbjct: 180 TLEEAGAKV 188
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.132 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,597,271
Number of extensions: 78271
Number of successful extensions: 257
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 256
Number of HSP's successfully gapped: 9
Length of query: 198
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 105
Effective length of database: 8,556,881
Effective search space: 898472505
Effective search space used: 898472505
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 109 (46.6 bits)