Os05g0549300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0549300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 67.85 | 0.387 | 3 | -0.654 | 0.184 | 0.91 | -0.361 | -8.27 | -0.0615 | 11.6 | 30.7 | 26 | -- | -- |
| 74.11 | 0.404 | 2.95 | -0.138 | 0.191 | 0.097 | -0.423 | -- | -0.0643 | 11.5 | 30.7 | 26 | -- | -- |
| 68.34 | 0.388 | 3 | -0.657 | 0.186 | 0.919 | -- | -8.46 | -0.0635 | 11.6 | 30.76 | 19 | -- | -- |
| 74.88 | 0.406 | 2.95 | -0.155 | 0.194 | 0.0903 | -- | -- | -0.0667 | 11.3 | 30.71 | 23 | -- | -- |
| 70.46 | 0.393 | 3.01 | -0.673 | -- | 0.975 | -- | -8.58 | -0.0623 | -- | 30.7 | 16 | -- | -- |
| 74.35 | 0.404 | 2.95 | -0.131 | 0.201 | -- | -0.41 | -- | -0.0709 | 11.7 | -- | -- | -- | -- |
| 75.07 | 0.406 | 2.95 | -0.147 | 0.203 | -- | -- | -- | -0.0727 | 11.6 | -- | -- | -- | -- |
| 77.19 | 0.411 | 2.95 | -0.164 | -- | 0.133 | -- | -- | -0.0655 | -- | 30.71 | 23 | -- | -- |
| 75.51 | 0.407 | 2.95 | -- | 0.197 | 0.0755 | -- | -- | -0.0505 | 11.4 | 30.71 | 23 | -- | -- |
| 77.66 | 0.412 | 2.96 | -0.153 | -- | -- | -- | -- | -0.0751 | -- | -- | -- | -- | -- |
| 75.65 | 0.407 | 2.95 | -- | 0.204 | -- | -- | -- | -0.0563 | 11.7 | -- | -- | -- | -- |
| 77.89 | 0.412 | 2.95 | -- | -- | 0.119 | -- | -- | -0.0484 | -- | 30.71 | 23 | -- | -- |
| 78.27 | 0.413 | 2.95 | -- | -- | -- | -- | -- | -0.0581 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 62.71 | humidity | 80 | 270 | < th | dose dependent | rect. | 8 | 1 |
| 4 | 65.27 | humidity | 80 | 270 | < th | dose dependent | rect. | 3 | 7 |
| 10 | 65.28 | humidity | 80 | 270 | < th | dose dependent | rect. | 5 | 5 |
| 14 | 65.61 | humidity | 70 | 270 | < th | dose independent | rect. | 8 | 1 |
| 27 | 66.18 | humidity | 80 | 270 | < th | dose independent | rect. | 6 | 3 |
| 59 | 67.10 | humidity | 60 | 1440 | > th | dose independent | rect. | 4 | 5 |
| 82 | 67.38 | humidity | 60 | 1440 | > th | dose independent | rect. | 24 | 9 |
| 112 | 67.42 | humidity | 60 | 1440 | > th | dose independent | rect. | 22 | 11 |
| 148 | 67.43 | humidity | 60 | 30 | < th | dose independent | rect. | 17 | 17 |
| 150 | 67.43 | humidity | 60 | 90 | < th | dose dependent | rect. | 18 | 15 |
| 151 | 67.43 | humidity | 60 | 10 | < th | dose dependent | rect. | 17 | 17 |
| 174 | 67.46 | humidity | 60 | 10 | < th | dose independent | rect. | 10 | 1 |
| 187 | 67.46 | humidity | 60 | 1440 | > th | dose independent | rect. | 20 | 13 |
| 194 | 67.46 | humidity | 60 | 10 | < th | dose dependent | rect. | 10 | 1 |
| 312 | 67.49 | temperature | 30 | 10 | > th | dose dependent | rect. | 11 | 1 |
| 326 | 67.50 | wind | 1 | 10 | < th | dose dependent | rect. | 9 | 1 |
| 402 | 67.62 | wind | 1 | 10 | < th | dose independent | rect. | 9 | 1 |
| 413 | 67.67 | wind | 1 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 449 | 67.75 | temperature | 30 | 10 | > th | dose independent | rect. | 11 | 1 |
| 450 | 67.75 | radiation | 40 | 30 | > th | dose dependent | rect. | 9 | 2 |
| 471 | 67.76 | wind | 1 | 720 | < th | dose dependent | rect. | 24 | 2 |
| 487 | 67.77 | humidity | 70 | 270 | > th | dose independent | sin | 9 | NA |
| 492 | 67.81 | temperature | 30 | 90 | > th | dose independent | rect. | 11 | 1 |
| 664 | 68.08 | humidity | 70 | 270 | < th | dose independent | sin | 9 | NA |
| 717 | 68.14 | humidity | 50 | 4320 | < th | dose independent | rect. | 12 | 2 |
| 745 | 68.21 | humidity | 80 | 270 | < th | dose dependent | sin | 9 | NA |
| 841 | 68.41 | humidity | 60 | 10 | < th | dose independent | sin | 10 | NA |
| 945 | 68.58 | temperature | 30 | 10 | > th | dose dependent | sin | 7 | NA |