BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0549300 Os05g0549300|AK064256
         (333 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G49330.1  | chr1:18250043-18251038 FORWARD LENGTH=332          129   2e-30
AT2G16190.1  | chr2:7020689-7021600 REVERSE LENGTH=304            127   7e-30

>AT1G49330.1 | chr1:18250043-18251038 FORWARD LENGTH=332
          Length = 331

 Score =  129 bits (324), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 62/152 (40%), Positives = 80/152 (52%)

Query: 170 DPPYPWATNEVAKHHSLVELARRDIININGEARCRRCDTRKMIVYNIATKFREVSDYFRQ 229
            PP+PWATN   +  SL  L    I  I GE +CR C+    + YN+  +F EV  ++  
Sbjct: 168 SPPFPWATNRRGEIQSLEYLESNQITTITGEVQCRHCEKVYQVSYNLRERFAEVVKFYLT 227

Query: 230 NYQHMNDRAQARWMNPVVPNCDSCGHERCMRPVIAAEKERINWXXXXXXXXXXXXXXDQL 289
             + M DRA   W  P    C+ CG E+ ++PVIA  K +INW              +QL
Sbjct: 228 EKRKMRDRAHKDWAYPEQRRCELCGREKAVKPVIAERKSQINWLFLLLGQTLGFCTLEQL 287

Query: 290 KYFCAHTNRHRTGAKDRVLFSTYEELCNQLAP 321
           K FC H+  HRTGAKDRVL+ TY  LC  L P
Sbjct: 288 KNFCKHSKNHRTGAKDRVLYLTYMGLCKMLQP 319



>AT2G16190.1 | chr2:7020689-7021600 REVERSE LENGTH=304
          Length = 303

 Score =  127 bits (320), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 65/176 (36%), Positives = 93/176 (52%), Gaps = 2/176 (1%)

Query: 146 GGGDDDEAPNVMNGGDKNDGNALPDPPYPWATNEVAKHHSLVELARRDIININGEARCRR 205
           GG     +   + G ++N G+    PPYPWAT +  K  S  +L+  +I  I+G+  C+ 
Sbjct: 124 GGQARRNSKRPVAGVERNVGDREIVPPYPWATKKPGKIQSFRDLSSNNINVISGQVHCKT 183

Query: 206 CDTRKMIVYNIATKFREVSDYFRQNYQHMNDRAQARWMNPVVPNCDSCGHERCMRPVIAA 265
           CD    + YN+  KF E+  Y + N + M  RA   W  P +  C +C  E  M+PV++ 
Sbjct: 184 CDRTDTVEYNLEEKFSELYGYIKVNKEEMRHRAPGSWSTPKLIPCRTCKSE--MKPVMSE 241

Query: 266 EKERINWXXXXXXXXXXXXXXDQLKYFCAHTNRHRTGAKDRVLFSTYEELCNQLAP 321
            KE INW              DQL+YFC   ++HRTG+KDRV++ TY  LC QL P
Sbjct: 242 RKEEINWLFLLLGQMLGCCTLDQLRYFCQLNSKHRTGSKDRVVYITYLSLCKQLDP 297



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.137    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,309,187
Number of extensions: 228171
Number of successful extensions: 519
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 518
Number of HSP's successfully gapped: 2
Length of query: 333
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 234
Effective length of database: 8,392,385
Effective search space: 1963818090
Effective search space used: 1963818090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)