FiT-DB / Search/ Help/ Sample detail

Os05g0548900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Phosphoethanolamine methyltransferase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12 (0.0552) R2 : 0.828
β1 : -8.82 (0.274) R2dD : 0.936 R2D : 0.44
β2 : 2.78 (0.126) R2dC : 0.212 R2C : 0.209
β3 : 0.768 (0.2) R2dE : 0.00784 R2E : -0.0363
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -8.93 (0.964) R2dD*E : 0.0744 R2D*E : -0.33
γ1 : -1.54 (0.127) R2dN8 : 0.108 R2N8 : -0.0632
σ : 0.92
deviance : 390.42
__
_____
C
peak time of C : 12.9
E
wheather : temperature
threshold : 18.4
memory length : 686
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 2.32
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
390.25 0.928 12 -8.84 2.77 0.778 0.274 -9.06 -1.54 12.9 18.23 685 2.16 --
446.14 0.984 11.9 -7.76 2.86 1.22 -0.952 -- -1.34 12.7 7.676 19729 3.15 --
390.42 0.92 12 -8.82 2.78 0.768 -- -8.93 -1.54 12.9 18.4 686 2.32 --
450.11 0.988 11.9 -7.76 2.87 1.19 -- -- -1.34 12.6 7.565 19772 3.85 --
481.38 1.02 12 -7.97 -- 4.33 -- -6.68 -1.42 -- -8.571 1032 2.21 --
464.13 1.01 11.8 -6.81 2.9 -- -0.993 -- -0.911 12.6 -- -- -- --
468.33 1.01 11.8 -6.85 2.9 -- -- -- -0.916 12.6 -- -- -- --
458.41 0.997 11.8 -7.09 -- 3.48 -- -- -1.06 -- -25.84 777 0.066 --
881.07 1.38 11.3 -- 2.84 -4.43 -- -- 1.25 12.6 14.93 47520 1.06 --
996.45 1.48 11.8 -6.95 -- -- -- -- -0.967 -- -- -- -- --
1705.65 1.93 11.6 -- 3.01 -- -- -- -0.153 12.8 -- -- -- --
1384.59 1.73 11.3 -- -- -4.57 -- -- 1.26 -- 15.1 47520 1.66 --
2272.38 2.23 11.7 -- -- -- -- -- -0.195 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 381.98 wind 1 14400 < th dose independent rect. 20 1
2 383.15 humidity 60 43200 < th dose independent rect. 11 1
3 384.58 humidity 60 43200 > th dose independent rect. 10 2
5 387.49 temperature 15 720 > th dose dependent rect. 3 4
6 387.52 wind 1 14400 < th dose dependent rect. 19 2
8 388.80 temperature 20 4320 < th dose independent rect. 21 1
9 389.01 temperature 20 4320 > th dose independent rect. 21 1
15 391.70 wind 7 43200 < th dose independent rect. 9 6
17 391.78 wind 7 43200 > th dose independent rect. 9 6
18 391.85 radiation 40 43200 < th dose independent rect. 10 1
20 392.15 atmosphere 1010 14400 > th dose independent rect. 1 1
27 392.51 temperature 20 720 > th dose dependent rect. 19 15
30 392.58 atmosphere 1005 14400 > th dose independent rect. 14 1
32 392.72 atmosphere 1010 14400 < th dose independent rect. 1 1
36 392.79 radiation 40 43200 > th dose dependent rect. 10 1
38 392.89 wind 1 14400 > th dose independent rect. 20 2
40 392.91 radiation 40 43200 > th dose independent rect. 10 1
42 392.99 wind 7 43200 > th dose independent rect. 4 11
50 393.32 wind 7 43200 < th dose independent rect. 4 11
51 393.32 atmosphere 1015 14400 < th dose dependent rect. 18 1
56 393.45 atmosphere 995 14400 > th dose dependent rect. 18 1
61 393.57 temperature 20 720 > th dose independent rect. 4 3
105 394.51 radiation 10 43200 < th dose independent rect. 8 1
117 394.57 atmosphere 1015 14400 < th dose dependent rect. 15 1
132 394.69 wind 7 43200 > th dose dependent rect. 10 5
141 394.77 radiation 40 43200 < th dose independent rect. 15 20
144 394.79 temperature 20 720 > th dose dependent sin 9 NA
145 394.79 atmosphere 995 14400 > th dose dependent rect. 15 10
215 395.17 atmosphere 995 14400 > th dose dependent rect. 21 1
222 395.22 wind 9 43200 > th dose independent rect. 14 16
228 395.23 wind 9 43200 < th dose independent rect. 11 21
239 395.28 wind 9 43200 > th dose independent rect. 10 21
264 395.39 atmosphere 1015 14400 < th dose dependent rect. 21 1
272 395.44 atmosphere 995 14400 > th dose dependent sin 17 NA
273 395.45 radiation 40 43200 < th dose independent rect. 1 10
277 395.46 radiation 40 43200 < th dose independent rect. 4 7
287 395.48 radiation 40 43200 < th dose independent rect. 18 17
291 395.49 radiation 40 43200 < th dose independent rect. 23 12
292 395.49 radiation 40 43200 < th dose independent rect. 21 14
304 395.51 wind 9 43200 > th dose dependent rect. 14 16
326 395.59 wind 9 43200 < th dose independent rect. 14 16
327 395.59 atmosphere 1015 14400 < th dose dependent sin 17 NA
363 395.73 wind 9 43200 < th dose independent rect. 13 19
409 395.90 temperature 20 1440 > th dose dependent rect. 18 4
421 395.94 atmosphere 995 14400 > th dose dependent rect. 24 1
430 395.97 temperature 20 1440 > th dose dependent rect. 19 2
472 396.15 temperature 15 720 > th dose dependent rect. 1 8
489 396.22 radiation 30 4320 > th dose independent rect. 16 17
498 396.25 atmosphere 1015 14400 < th dose dependent rect. 24 1
540 396.40 wind 5 43200 > th dose dependent rect. 13 1
652 396.84 wind 9 43200 > th dose independent rect. 9 14
667 396.88 wind 7 43200 > th dose independent rect. 19 20
675 396.90 radiation 40 43200 > th dose dependent rect. 7 4
694 396.92 wind 9 43200 > th dose independent rect. 9 16
705 396.93 wind 7 43200 > th dose dependent rect. 10 20
707 396.94 wind 9 43200 < th dose independent rect. 9 14
792 397.14 wind 9 43200 < th dose independent rect. 9 11
884 397.28 radiation 30 4320 > th dose independent rect. 7 2
906 397.29 wind 9 43200 < th dose independent sin 21 NA
929 397.32 atmosphere 995 14400 > th dose dependent no NA NA
958 397.36 wind 7 43200 < th dose independent rect. 20 19
983 397.39 atmosphere 995 14400 > th dose dependent rect. 24 23
988 397.41 wind 9 43200 > th dose independent sin 21 NA
989 397.41 atmosphere 1005 14400 < th dose independent rect. 15 1