BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0548900 Os05g0548900|009-027-E06
(208 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G18000.1 | chr3:6154578-6157331 FORWARD LENGTH=492 349 6e-97
AT1G73600.2 | chr1:27669224-27673400 FORWARD LENGTH=505 343 3e-95
AT1G48600.2 | chr1:17966074-17969077 FORWARD LENGTH=492 340 3e-94
AT1G64970.1 | chr1:24134337-24135993 REVERSE LENGTH=349 67 6e-12
AT5G13710.1 | chr5:4424048-4426866 REVERSE LENGTH=337 56 1e-08
AT4G33110.1 | chr4:15972497-15974531 REVERSE LENGTH=356 49 2e-06
AT1G20330.1 | chr1:7038968-7040053 REVERSE LENGTH=362 48 4e-06
>AT3G18000.1 | chr3:6154578-6157331 FORWARD LENGTH=492
Length = 491
Score = 349 bits (895), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 160/208 (76%), Positives = 184/208 (88%)
Query: 1 GQKVLDVGCGIGGGDFYMAENYDAHVLGIDLSINMVSFAIERAIGRKCSVEFEVADCTTK 60
GQKVLDVGCGIGGGDFYMAE +D HV+GIDLS+NM+SFA+ERAIG CSVEFEVADCTTK
Sbjct: 283 GQKVLDVGCGIGGGDFYMAEKFDVHVVGIDLSVNMISFALERAIGLSCSVEFEVADCTTK 342
Query: 61 TYAPNTFDVIYSRDTILHIHDKPALFRSFFKWLKPGGKVLISDYCRNPGKPSEEFAAYIK 120
Y N+FDVIYSRDTILHI DKPALFR+FFKWLKPGGKVLISDYCR+P PS EF+ YIK
Sbjct: 343 HYPDNSFDVIYSRDTILHIQDKPALFRTFFKWLKPGGKVLISDYCRSPKTPSAEFSEYIK 402
Query: 121 QRGYDLHDVKTYGKMLEDAGFHHVIAEDRTDQFLRVLQRELAEVEKNKEAFMADFTQEDY 180
QRGYDLHDV+ YG+ML+DAGF VIAEDRTDQF++VL+REL VEK KE F++DF++EDY
Sbjct: 403 QRGYDLHDVQAYGQMLKDAGFTDVIAEDRTDQFMQVLKRELDRVEKEKEKFISDFSKEDY 462
Query: 181 DDIVNGWNAKLKRSSAGEQRWGLFIATK 208
DDIV GW +KL+R ++ EQ+WGLFIA K
Sbjct: 463 DDIVGGWKSKLERCASDEQKWGLFIANK 490
>AT1G73600.2 | chr1:27669224-27673400 FORWARD LENGTH=505
Length = 504
Score = 343 bits (880), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 157/208 (75%), Positives = 182/208 (87%)
Query: 1 GQKVLDVGCGIGGGDFYMAENYDAHVLGIDLSINMVSFAIERAIGRKCSVEFEVADCTTK 60
GQKVLDVGCGIGGGDFYMAEN+D V+GIDLS+NM+SFA+E AIG KCSVEFEVADCT K
Sbjct: 296 GQKVLDVGCGIGGGDFYMAENFDVDVVGIDLSVNMISFALEHAIGLKCSVEFEVADCTKK 355
Query: 61 TYAPNTFDVIYSRDTILHIHDKPALFRSFFKWLKPGGKVLISDYCRNPGKPSEEFAAYIK 120
Y NTFDVIYSRDTILHI DKPALFR F+KWLKPGGKVLI+DYCR+P PS +FA YIK
Sbjct: 356 EYPDNTFDVIYSRDTILHIQDKPALFRRFYKWLKPGGKVLITDYCRSPKTPSPDFAIYIK 415
Query: 121 QRGYDLHDVKTYGKMLEDAGFHHVIAEDRTDQFLRVLQRELAEVEKNKEAFMADFTQEDY 180
+RGYDLHDV+ YG+ML DAGF VIAEDRTDQF++VL+REL VEK KE F++DF++EDY
Sbjct: 416 KRGYDLHDVQAYGQMLRDAGFEEVIAEDRTDQFMKVLKRELDAVEKEKEEFISDFSKEDY 475
Query: 181 DDIVNGWNAKLKRSSAGEQRWGLFIATK 208
+DI+ GW +KL RSS+GEQ+WGLFIA +
Sbjct: 476 EDIIGGWKSKLLRSSSGEQKWGLFIAKR 503
>AT1G48600.2 | chr1:17966074-17969077 FORWARD LENGTH=492
Length = 491
Score = 340 bits (872), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 163/208 (78%), Positives = 190/208 (91%)
Query: 1 GQKVLDVGCGIGGGDFYMAENYDAHVLGIDLSINMVSFAIERAIGRKCSVEFEVADCTTK 60
GQKVLDVGCGIGGGDFYMAEN+D HV+GIDLS+NM+SFA+ERAIG KCSVEFEVADCTTK
Sbjct: 283 GQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGLKCSVEFEVADCTTK 342
Query: 61 TYAPNTFDVIYSRDTILHIHDKPALFRSFFKWLKPGGKVLISDYCRNPGKPSEEFAAYIK 120
TY N+FDVIYSRDTILHI DKPALFR+FFKWLKPGGKVLI+DYCR+ PS EFA YIK
Sbjct: 343 TYPDNSFDVIYSRDTILHIQDKPALFRTFFKWLKPGGKVLITDYCRSAETPSPEFAEYIK 402
Query: 121 QRGYDLHDVKTYGKMLEDAGFHHVIAEDRTDQFLRVLQRELAEVEKNKEAFMADFTQEDY 180
QRGYDLHDV+ YG+ML+DAGF VIAEDRTDQF++VL+REL +VEK KE F++DF++EDY
Sbjct: 403 QRGYDLHDVQAYGQMLKDAGFDDVIAEDRTDQFVQVLRRELEKVEKEKEEFISDFSEEDY 462
Query: 181 DDIVNGWNAKLKRSSAGEQRWGLFIATK 208
+DIV GW+AKL+R+++GEQ+WGLFIA K
Sbjct: 463 NDIVGGWSAKLERTASGEQKWGLFIADK 490
>AT1G64970.1 | chr1:24134337-24135993 REVERSE LENGTH=349
Length = 348
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 2/113 (1%)
Query: 4 VLDVGCGIGGGDFYMAENYDAHVLGIDLSINMVSFAIERAIGRKCS--VEFEVADCTTKT 61
V+DVGCGIGG Y+A + A +GI LS A + A + + F+VAD +
Sbjct: 130 VVDVGCGIGGSSRYLASKFGAECIGITLSPVQAKRANDLAAAQSLAHKASFQVADALDQP 189
Query: 62 YAPNTFDVIYSRDTILHIHDKPALFRSFFKWLKPGGKVLISDYCRNPGKPSEE 114
+ FD+++S ++ H+ DK + + PGG+++I +C EE
Sbjct: 190 FEDGKFDLVWSMESGEHMPDKAKFVKELVRVAAPGGRIIIVTWCHRNLSAGEE 242
>AT5G13710.1 | chr5:4424048-4426866 REVERSE LENGTH=337
Length = 336
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 9/157 (5%)
Query: 1 GQKVLDVGCGIGGGDFYMAENYDAHVLGIDLSINMVSFAIE--RAIGRKCSVEFEVADCT 58
GQKVLDVGCGIGG +A ++ V G++ + ++ E R G + F AD
Sbjct: 95 GQKVLDVGCGIGGPLREIARFSNSVVTGLNNNEYQITRGKELNRLAGVDKTCNFVKADFM 154
Query: 59 TKTYAPNTFDVIYSRDTILHIHDKPALFRSFFKWLKPGGKVLISDYCRNPG-KPSEEFAA 117
+ N+FD +Y+ + H D ++ ++ LKPG ++C P
Sbjct: 155 KMPFPENSFDAVYAIEATCHAPDAYGCYKEIYRVLKPGQCFAAYEWCMTDAFDPDNAEHQ 214
Query: 118 YIK---QRGYDLHDVKTYGKMLE---DAGFHHVIAED 148
IK + G L D++ K LE AGF + +D
Sbjct: 215 KIKGEIEIGDGLPDIRLTTKCLEALKQAGFEVIWEKD 251
>AT4G33110.1 | chr4:15972497-15974531 REVERSE LENGTH=356
Length = 355
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 5/108 (4%)
Query: 1 GQKVLDVGCGIGGGDFYMAENYD-AHVLGIDLSINMVSFAIE--RAIGRKCSVEFEVADC 57
GQ VLD+GCG G Y+A Y + GI S +F E R +G + ++E VAD
Sbjct: 130 GQSVLDIGCGWGSLSLYIARKYSKCKLTGICNSKTQKAFIDEKCRKLGLQ-NIEIIVADI 188
Query: 58 TTKTYAPNTFDVIYSRDTILHIHDKPALFRSFFKWLKPGGKVLISDYC 105
+T + T+D I+S + H+ + L + KW+K + + +C
Sbjct: 189 STFEH-EGTYDRIFSIEMFEHMKNYGELLKKIGKWMKEDSLLFVHYFC 235
>AT1G20330.1 | chr1:7038968-7040053 REVERSE LENGTH=362
Length = 361
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Query: 1 GQKVLDVGCGIGGGDFYMAENYDAHVLGIDLSINMVSFAI--ERAIGRKCSVEFEVADCT 58
GQK+LDVGCG+GG +A + A+V+GI ++ V+ A + G E +
Sbjct: 124 GQKILDVGCGVGGPMRAIASHSRANVVGITINEYQVNRARLHNKKAGLDALCEVVCGNFL 183
Query: 59 TKTYAPNTFDVIYSRDTILHIHDKPALFRSFFKWLKPG 96
+ N+FD YS + H ++ ++ LKPG
Sbjct: 184 QMPFDDNSFDGAYSIEATCHAPKLEEVYAEIYRVLKPG 221
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.139 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,744,405
Number of extensions: 199055
Number of successful extensions: 549
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 549
Number of HSP's successfully gapped: 7
Length of query: 208
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 114
Effective length of database: 8,529,465
Effective search space: 972359010
Effective search space used: 972359010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)