Os05g0548800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Acid phosphatase/vanadium-dependent haloperoxidase related family protein.
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Os05g0548800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Acid phosphatase/vanadium-dependent haloperoxidase related family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.69 | 0.338 | 8.66 | -1.42 | 1.17 | 0.969 | -0.285 | -1.42 | -0.471 | 8.97 | 16.6 | 647 | -- | -- |
| 52.97 | 0.342 | 8.64 | -1.13 | 0.903 | 1.14 | -0.113 | -- | -0.403 | 7.9 | 14.18 | 613 | -- | -- |
| 51.92 | 0.336 | 8.66 | -1.39 | 1.17 | 0.987 | -- | -1.22 | -0.461 | 8.91 | 16.3 | 604 | -- | -- |
| 53.01 | 0.341 | 8.64 | -1.14 | 0.903 | 1.15 | -- | -- | -0.403 | 7.9 | 14.18 | 613 | -- | -- |
| 96.85 | 0.461 | 8.68 | -1.24 | -- | 1.05 | -- | -0.786 | -0.421 | -- | 16.3 | 604 | -- | -- |
| 65.7 | 0.38 | 8.6 | -0.911 | 0.928 | -- | -0.0828 | -- | -0.241 | 9.27 | -- | -- | -- | -- |
| 65.73 | 0.38 | 8.6 | -0.914 | 0.929 | -- | -- | -- | -0.241 | 9.28 | -- | -- | -- | -- |
| 97.34 | 0.462 | 8.66 | -1.12 | -- | 1.13 | -- | -- | -0.389 | -- | 14.18 | 613 | -- | -- |
| 80.95 | 0.419 | 8.56 | -- | 1.06 | 0.591 | -- | -- | -0.0862 | 8.97 | 31.6 | 654 | -- | -- |
| 115.92 | 0.503 | 8.63 | -0.918 | -- | -- | -- | -- | -0.237 | -- | -- | -- | -- | -- |
| 87.76 | 0.438 | 8.58 | -- | 0.929 | -- | -- | -- | -0.139 | 9.35 | -- | -- | -- | -- |
| 128.79 | 0.53 | 8.62 | -- | -- | 0.779 | -- | -- | -0.224 | -- | 14.18 | 613 | -- | -- |
| 138.16 | 0.549 | 8.6 | -- | -- | -- | -- | -- | -0.135 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.45 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 2 | 50.55 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 21 |
| 4 | 50.67 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 21 |
| 6 | 50.69 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 10 |
| 7 | 50.70 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 18 | 50.86 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 20 | 50.91 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 22 | 50.94 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 24 | 50.97 | temperature | 15 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 27 | 51.03 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 36 | 51.19 | temperature | 20 | 720 | > th | dose dependent | sin | 9 | NA |
| 38 | 51.20 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 39 | 51.21 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 42 | 51.23 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 43 | 51.24 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 44 | 51.24 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 52 | 51.29 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 59 | 51.35 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 68 | 51.41 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 69 | 51.41 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 70 | 51.42 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 9 |
| 95 | 51.52 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 11 |
| 102 | 51.53 | temperature | 20 | 1440 | > th | dose dependent | rect. | 14 | 15 |
| 111 | 51.55 | temperature | 20 | 1440 | > th | dose dependent | rect. | 14 | 17 |
| 126 | 51.60 | temperature | 20 | 1440 | > th | dose dependent | sin | 15 | NA |
| 135 | 51.61 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 171 | 51.70 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 174 | 51.71 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 182 | 51.72 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 4 |
| 227 | 51.83 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 228 | 51.83 | wind | 1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 235 | 51.84 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 250 | 51.87 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 271 | 51.93 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 278 | 51.94 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 289 | 51.94 | temperature | 15 | 720 | > th | dose dependent | no | NA | NA |
| 290 | 51.94 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 304 | 51.95 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 350 | 52.00 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 404 | 52.05 | temperature | 30 | 720 | > th | dose independent | rect. | 15 | 1 |
| 491 | 52.13 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 537 | 52.18 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 15 |
| 637 | 52.27 | temperature | 30 | 10 | < th | dose dependent | rect. | 22 | 23 |
| 662 | 52.30 | temperature | 30 | 1440 | < th | dose dependent | sin | 14 | NA |
| 674 | 52.31 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 690 | 52.32 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 691 | 52.33 | humidity | 90 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 936 | 52.52 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 12 | 4 |