BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0548800 Os05g0548800|AK062554
(75 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G21610.1 | chr3:7609377-7610601 REVERSE LENGTH=175 98 8e-22
AT1G67600.1 | chr1:25336701-25337455 REVERSE LENGTH=164 80 3e-16
AT1G24350.3 | chr1:8639098-8640313 REVERSE LENGTH=187 70 3e-13
AT3G61770.1 | chr3:22864635-22866248 FORWARD LENGTH=285 68 9e-13
>AT3G21610.1 | chr3:7609377-7610601 REVERSE LENGTH=175
Length = 174
Score = 98.2 bits (243), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 45/67 (67%), Positives = 54/67 (80%), Gaps = 1/67 (1%)
Query: 8 VMYDASGIRFHTGRQAALLNQIVSDFPPEHPIISSFRPLQEPLGHSPFQVFAGALVGCSI 67
VMYDASG+R H GRQA LLNQIV +FPPEHP +S+ RPL+E LGH+P QV AG ++GC +
Sbjct: 108 VMYDASGVRLHAGRQAELLNQIVCEFPPEHP-LSTVRPLRELLGHTPIQVAAGGILGCVV 166
Query: 68 AYLMGKS 74
AYLM S
Sbjct: 167 AYLMRSS 173
>AT1G67600.1 | chr1:25336701-25337455 REVERSE LENGTH=164
Length = 163
Score = 79.7 bits (195), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 46/61 (75%), Gaps = 1/61 (1%)
Query: 8 VMYDASGIRFHTGRQAALLNQIVSDFPPEHPIISSFRPLQEPLGHSPFQVFAGALVGCSI 67
VMYDA+G+R H GRQA +LNQIV + P EHP+ + RPL+E LGH+P QV AG ++G S
Sbjct: 93 VMYDATGVRLHAGRQAEVLNQIVYELPAEHPLAET-RPLRELLGHTPPQVIAGGMLGIST 151
Query: 68 A 68
A
Sbjct: 152 A 152
>AT1G24350.3 | chr1:8639098-8640313 REVERSE LENGTH=187
Length = 186
Score = 69.7 bits (169), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 39/50 (78%), Gaps = 1/50 (2%)
Query: 8 VMYDASGIRFHTGRQAALLNQIVSDFPPEHPIISSFRPLQEPLGHSPFQV 57
VMYDA+G+R H GRQA +LNQIV + P EHP+ S RPL+E LGH+P Q+
Sbjct: 97 VMYDATGVRLHAGRQAEVLNQIVYELPAEHPLAES-RPLRELLGHTPPQI 145
>AT3G61770.1 | chr3:22864635-22866248 FORWARD LENGTH=285
Length = 284
Score = 68.2 bits (165), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 38/65 (58%), Positives = 43/65 (66%), Gaps = 2/65 (3%)
Query: 4 FFLQVMYDASGIRFHTGRQAALLNQIVSDFPPEHPIISSFRPLQEPLGHSPFQVFAGALV 63
F L VMYDA G+R H G QA +LN I+ D HPI S R L+E LGH+P QV AGALV
Sbjct: 211 FSLIVMYDAIGVRRHAGMQAEVLNLIIRDLFEGHPI--SQRKLKELLGHTPSQVLAGALV 268
Query: 64 GCSIA 68
G IA
Sbjct: 269 GIVIA 273
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.328 0.143 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,561,847
Number of extensions: 51858
Number of successful extensions: 156
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 4
Length of query: 75
Length of database: 11,106,569
Length adjustment: 47
Effective length of query: 28
Effective length of database: 9,818,017
Effective search space: 274904476
Effective search space used: 274904476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 104 (44.7 bits)