Os05g0548200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transcription initiation factor IIB (General transcription factor TFIIB).
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Os05g0548200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transcription initiation factor IIB (General transcription factor TFIIB).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 81.44 | 0.42 | 2.93 | 0.0111 | 0.263 | 0.597 | -0.126 | -1.87 | 0.0776 | 7.26 | 1015 | 10 | -- | -- |
| 83.01 | 0.428 | 2.93 | -0.0102 | 0.264 | 0.613 | -0.0628 | -- | 0.0741 | 7.23 | 1015 | 10 | -- | -- |
| 81.48 | 0.424 | 2.93 | 0.00858 | 0.263 | 0.569 | -- | -1.8 | 0.0777 | 7.23 | 1015 | 12 | -- | -- |
| 83.02 | 0.427 | 2.93 | -0.0115 | 0.264 | 0.613 | -- | -- | 0.0743 | 7.24 | 1015 | 10 | -- | -- |
| 85.13 | 0.432 | 2.93 | 0.0133 | -- | 0.52 | -- | -1.81 | 0.0817 | -- | 1015 | 16 | -- | -- |
| 84.3 | 0.43 | 2.93 | -0.0133 | 0.258 | -- | -0.0686 | -- | 0.0671 | 6.97 | -- | -- | -- | -- |
| 84.31 | 0.43 | 2.93 | -0.0145 | 0.258 | -- | -- | -- | 0.0673 | 6.98 | -- | -- | -- | -- |
| 86.7 | 0.436 | 2.93 | -0.00703 | -- | 0.562 | -- | -- | 0.0782 | -- | 1015 | 10 | -- | -- |
| 83.03 | 0.427 | 2.93 | -- | 0.264 | 0.614 | -- | -- | 0.0755 | 7.25 | 1015 | 10 | -- | -- |
| 87.8 | 0.438 | 2.94 | -0.00925 | -- | -- | -- | -- | 0.0721 | -- | -- | -- | -- | -- |
| 84.32 | 0.43 | 2.93 | -- | 0.257 | -- | -- | -- | 0.0689 | 6.98 | -- | -- | -- | -- |
| 86.7 | 0.435 | 2.93 | -- | -- | 0.562 | -- | -- | 0.079 | -- | 1015 | 10 | -- | -- |
| 87.8 | 0.437 | 2.94 | -- | -- | -- | -- | -- | 0.0731 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 73.30 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 1 |
| 2 | 73.30 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 1 |
| 3 | 75.73 | wind | 1.0 | 10 | < th | dose dependent | rect. | 4 | 1 |
| 4 | 75.80 | wind | 1.0 | 10 | < th | dose independent | rect. | 4 | 1 |
| 7 | 75.88 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 3 | 1 |
| 11 | 75.88 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 3 | 1 |
| 27 | 79.85 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 2 | 1 |
| 28 | 79.87 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 3 | 5 |
| 48 | 79.87 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 3 | 5 |
| 76 | 79.92 | wind | 1.0 | 10 | < th | dose independent | rect. | 3 | 6 |
| 90 | 80.23 | wind | 1.0 | 10 | < th | dose dependent | rect. | 3 | 6 |
| 100 | 80.72 | wind | 1.0 | 720 | < th | dose independent | rect. | 24 | 1 |
| 101 | 80.75 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 11 | 3 |
| 128 | 80.88 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 129 | 80.88 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 130 | 80.93 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 3 | 3 |
| 133 | 80.96 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 3 | 4 |
| 135 | 80.99 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 8 | 3 |
| 136 | 80.99 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 23 |
| 148 | 81.08 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 150 | 81.10 | wind | 1.0 | 720 | < th | dose dependent | rect. | 24 | 1 |
| 157 | 81.17 | atmosphere | 1010.0 | 720 | > th | dose dependent | rect. | 23 | 1 |
| 158 | 81.19 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 181 | 81.28 | wind | 1.0 | 1440 | > th | dose independent | rect. | 23 | 2 |
| 183 | 81.28 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 8 | 6 |
| 208 | 81.33 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 10 | 4 |
| 209 | 81.33 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 1 | 13 |
| 210 | 81.33 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 19 | 19 |
| 219 | 81.35 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 22 | 16 |
| 221 | 81.36 | wind | 7.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 223 | 81.36 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 226 | 81.36 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 230 | 81.36 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 239 | 81.36 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 240 | 81.36 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 241 | 81.36 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 252 | 81.36 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 6 | 23 |
| 259 | 81.38 | wind | 1.0 | 10 | < th | dose independent | rect. | 11 | 2 |
| 287 | 81.40 | atmosphere | 1015.0 | 90 | < th | dose independent | sin | 6 | NA |
| 288 | 81.40 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 289 | 81.41 | atmosphere | 1015.0 | 10 | < th | dose independent | sin | 17 | NA |
| 290 | 81.41 | atmosphere | 1015.0 | 90 | < th | dose independent | sin | 18 | NA |
| 291 | 81.41 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 292 | 81.42 | atmosphere | 1015.0 | 270 | < th | dose independent | sin | 8 | NA |
| 295 | 81.42 | atmosphere | 1015.0 | 10 | < th | dose independent | sin | 5 | NA |
| 297 | 81.42 | atmosphere | 1015.0 | 720 | > th | dose independent | rect. | 22 | 1 |
| 383 | 81.44 | atmosphere | 1015.0 | 10 | > th | dose independent | sin | 7 | NA |
| 479 | 81.44 | atmosphere | 1015.0 | 10 | > th | dose independent | no | NA | NA |
| 483 | 81.44 | atmosphere | 1015.0 | 10 | < th | dose independent | no | NA | NA |
| 493 | 81.44 | atmosphere | 1015.0 | 10 | > th | dose independent | rect. | 23 | 1 |