BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0548200 Os05g0548200|AK107525
(316 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G10330.1 | chr3:3199907-3201642 FORWARD LENGTH=313 261 4e-70
AT2G41630.1 | chr2:17355555-17357400 REVERSE LENGTH=313 253 9e-68
AT3G29380.1 | chr3:11282407-11283524 REVERSE LENGTH=337 167 7e-42
AT3G57370.1 | chr3:21226839-21228475 REVERSE LENGTH=361 79 4e-15
AT4G36650.1 | chr4:17283283-17285527 REVERSE LENGTH=504 63 2e-10
AT4G10680.1 | chr4:6587521-6588069 FORWARD LENGTH=183 61 7e-10
AT5G39230.1 | chr5:15709474-15709925 FORWARD LENGTH=120 48 6e-06
>AT3G10330.1 | chr3:3199907-3201642 FORWARD LENGTH=313
Length = 312
Score = 261 bits (666), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 143/305 (46%), Positives = 194/305 (63%), Gaps = 12/305 (3%)
Query: 10 AYCPDCRRATAVVLDHTTGDTICTECALVLDARYIDETSEWRTFANDGASDDRDPNRVGD 69
A+C DC+R T VV DH+ GDT+C+EC LVL++ IDETSEWRTFAN+ S D DP RVG
Sbjct: 4 AFCSDCKRHTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANE--SGDNDPVRVGG 61
Query: 70 RADPFLPDHVGGTTIXXXXXXXXXXXXXXLLTRRRVDVVGPSPENALVAAFRGIADMADR 129
+P L D G TT+ L R + G +P+ L+ AF+ IA MADR
Sbjct: 62 PTNPLLADG-GLTTVISKPNGSSGDFLSSSLGRWQNR--GSNPDRGLIVAFKTIATMADR 118
Query: 130 LGLVATIRDRAKEVFKKLGEAPTKGLPRGRNRDAVYAACLFIACRNEGMPRTYKELASVT 189
LGLVATI+DRA E++K++ + + RGRN+DA+ AACL+IACR E PRT KE+ SV
Sbjct: 119 LGLVATIKDRANEIYKRVEDQKSS---RGRNQDALLAACLYIACRQEDKPRTVKEICSVA 175
Query: 190 AEGAAAKKEIGRLTTLIKKHLGDQGEGRAMDIGVVRSTDYLRRFCSRLGLGHQDVRAAGD 249
A KKEIGR I K LG + G+ +++G + + D++RRFCS LG+ +Q V+AA +
Sbjct: 176 --NGATKKEIGRAKEYIVKQLGLE-TGQLVEMGTIHAGDFMRRFCSNLGMTNQTVKAAQE 232
Query: 250 AXXXXXXXXXXXXNPESIAAAIIYMVVQRAGGSKSVRDVSTATGVAEGTITAAHKELAPH 309
+ +P SIAAA+IY++ Q + K +RD+S ATGVAEGTI ++K+L PH
Sbjct: 233 S-VQKSEEFDIRRSPISIAAAVIYIITQLSDEKKPLRDISVATGVAEGTIRNSYKDLYPH 291
Query: 310 ASVLF 314
S +
Sbjct: 292 LSKII 296
>AT2G41630.1 | chr2:17355555-17357400 REVERSE LENGTH=313
Length = 312
Score = 253 bits (646), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 138/304 (45%), Positives = 192/304 (63%), Gaps = 12/304 (3%)
Query: 10 AYCPDCRRATAVVLDHTTGDTICTECALVLDARYIDETSEWRTFANDGASDDRDPNRVGD 69
AYC DC++ T +V+DH+ GDT+C+EC LVL++ IDETSEWRTFAN+ S + DPNRVG
Sbjct: 4 AYCTDCKKETELVVDHSAGDTLCSECGLVLESHSIDETSEWRTFANE--SSNSDPNRVGG 61
Query: 70 RADPFLPDHVGGTTIXXXXXXXXXXXXXXLLTRRRVDVVGPSPENALVAAFRGIADMADR 129
+P L D T I L R + + L+ AF+ IA M++R
Sbjct: 62 PTNPLLADSALTTVIAKPNGSSGDFLSSSL---GRWQNRNSNSDRGLIQAFKTIATMSER 118
Query: 130 LGLVATIRDRAKEVFKKLGEAPTKGLPRGRNRDAVYAACLFIACRNEGMPRTYKELASVT 189
LGLVATI+DRA E++K+L + + RGRN+DA+YAACL+IACR E PRT KE+ V
Sbjct: 119 LGLVATIKDRANELYKRLEDQKSS---RGRNQDALYAACLYIACRQEDKPRTIKEIC-VI 174
Query: 190 AEGAAAKKEIGRLTTLIKKHLGDQGEGRAMDIGVVRSTDYLRRFCSRLGLGHQDVRAAGD 249
A G A KKEIGR I K LG + G+++D+G + + D++RRFCS L + + V+AA +
Sbjct: 175 ANG-ATKKEIGRAKDYIVKTLGLE-PGQSVDLGTIHAGDFMRRFCSNLAMSNHAVKAAQE 232
Query: 250 AXXXXXXXXXXXXNPESIAAAIIYMVVQRAGGSKSVRDVSTATGVAEGTITAAHKELAPH 309
A +P SIAA +IY++ Q + K+++D+S ATGVAEGTI ++K+L PH
Sbjct: 233 A-VQKSEEFDIRRSPISIAAVVIYIITQLSDDKKTLKDISHATGVAEGTIRNSYKDLYPH 291
Query: 310 ASVL 313
S +
Sbjct: 292 LSKI 295
>AT3G29380.1 | chr3:11282407-11283524 REVERSE LENGTH=337
Length = 336
Score = 167 bits (423), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 105/303 (34%), Positives = 158/303 (52%), Gaps = 8/303 (2%)
Query: 12 CPDCRRATAVVLDHTTGDTICTECALVLDARYIDETSEWRTFANDGASDDRDPNRVGDRA 71
C DC+R T +V+DH++GDTIC+EC LVL+A I+ + EWRTFA+D DRDPNRVG
Sbjct: 6 CLDCKRPTIMVVDHSSGDTICSECGLVLEAHIIEYSQEWRTFASDDNHSDRDPNRVGAAT 65
Query: 72 DPFLPDHVGGTTIXXXXXXXXXXXXXXLLTR--RRVDVVGPSPENALVAAFRGIADMADR 129
+PFL T I ++ R + V E+ + AF I M D
Sbjct: 66 NPFLKSGDLVTIIEKPKETASSVLSKDDISTLFRAHNQVKNHEEDLIKQAFEEIQRMTDA 125
Query: 130 LGLVATIRDRAKEVFKKL-GEAPTKGLPRGRNRDAVYAACLFIACRNEGMPRTYKELASV 188
L L I RA E+ K G A TK L RG+ +A+ AA + ACR + RT KE+A V
Sbjct: 126 LDLDIVINSRACEIVSKYDGHANTK-LRRGKKLNAICAASVSTACRELQLSRTLKEIAEV 184
Query: 189 TAEGAAAKKEIGRLTTLIKKHLGDQGEGRAMDIGVVRSTDYLRRFCSRLGLGHQDVRAAG 248
KK+I + + +IK+ L + ++ + + +RRFCS+L + +++ A
Sbjct: 185 A--NGVDKKDIRKESLVIKRVLESHQTSVSASQAIINTGELVRRFCSKLDISQREIMAIP 242
Query: 249 DAXXXXXXXXXXXXNPESIAAAIIYMVVQRAGGS-KSVRDVSTATGVAEGTITAAHKELA 307
+A NP+S+ AAII+M+ + + K +R++ V E TI + K++
Sbjct: 243 EA-VEKAENFDIRRNPKSVLAAIIFMISHISQTNRKPIREIGIVAEVVENTIKNSVKDMY 301
Query: 308 PHA 310
P+A
Sbjct: 302 PYA 304
>AT3G57370.1 | chr3:21226839-21228475 REVERSE LENGTH=361
Length = 360
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 102/198 (51%), Gaps = 13/198 (6%)
Query: 112 PENALVAAFRGIADMADRLGLVATIRDRAKEVFKKLGEAPTKGLPRGRNRDAVYAACLFI 171
P AL + I +++ L L ATI+ +A E+FK + + RG+ R+ ++AAC++I
Sbjct: 155 PNKAL--SIVSIEAISNGLKLPATIKGQANEIFKVV-----ESYARGKERNVLFAACIYI 207
Query: 172 ACRNEGMPRTYKELASVTAEGAAAKKEIGRLTTLIKKHLGDQGEGRAMDIGVVRSTDYLR 231
ACR+ M RT +E++ + A+ +I I + L + + M I + ++++
Sbjct: 208 ACRDNDMTRTMREISRFANK--ASISDISETVGFIAEKL-EINKNWYMSI---ETANFIK 261
Query: 232 RFCSRLGLGHQDVRAAGDAXXXXXXXXXXXXNPESIAAAIIYMVVQRAGGSKSVRDVSTA 291
RFCS L + V AA +A P S+AA I+Y++ + + ++ + A
Sbjct: 262 RFCSIFRLDKEAVEAALEAAESYDYMTNGRRAPVSVAAGIVYVIARLSYEKHLLKGLIEA 321
Query: 292 TGVAEGTITAAHKELAPH 309
TGVAE TI + +L P+
Sbjct: 322 TGVAENTIKGTYGDLYPN 339
>AT4G36650.1 | chr4:17283283-17285527 REVERSE LENGTH=504
Length = 503
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 84/189 (44%), Gaps = 12/189 (6%)
Query: 119 AFRGIADMADRLGLVATIRDRAKEVFKKLGEAPTKGLPRGRNRDAVYAACLFIACRNEGM 178
A+ I D+A LGL I + A ++F+ A R R+ +A+ ACL A R
Sbjct: 133 AYMQIIDVASILGLDCDISEHAFQLFRDCCSATCL---RNRSVEALATACLVQAIREAQE 189
Query: 179 PRTYKELASVTAEGAAAKKEIGRLTTLIKKHLGDQGEGRAMDIGVVRSTDYLRRFCSRLG 238
PRT +E+ S+ A +KEIG+ ++ + L + I V ++ RFC+ L
Sbjct: 190 PRTLQEI-SIAAN--VQQKEIGKYIKILGEALQLSQPINSNSISV-----HMPRFCTLLQ 241
Query: 239 LGHQDVRAAGD-AXXXXXXXXXXXXNPESIAAAIIYMVVQRAGGSKSVRDVSTATGVAEG 297
L A NP SI+AA IY+ Q K+ ++ TG+ E
Sbjct: 242 LNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKITGLTEV 301
Query: 298 TITAAHKEL 306
T+ +KEL
Sbjct: 302 TLRKVYKEL 310
>AT4G10680.1 | chr4:6587521-6588069 FORWARD LENGTH=183
Length = 182
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 85/200 (42%), Gaps = 26/200 (13%)
Query: 12 CPDCRRATAVVLDHTTGDTICTECALVLDARYIDETSEWRTFANDGASDDRDPNRVGDRA 71
C +C+R T V+++ GDTIC EC V++ ID+ DGAS +PN
Sbjct: 7 CLECKRPTETVVNYKNGDTICIECGHVIENNIIDDL--------DGAST--NPN----LK 52
Query: 72 DPFLPDHVGGTTIXXXXXXXXXXXXXXLLTRRRVDVVGPSPENALVAAFRGIADMADRLG 131
LP TI L + + E+ + A+ I M + LG
Sbjct: 53 SGHLP------TIIFKLSGKSSSLASKLRRTQNEMIKNKQEEDVIKIAYAEIERMTEALG 106
Query: 132 LVATIRDRAKEVFKKLGEAPTKGLPRGRNRDAVYAACLFIACRNEGMPRTYKELASVTAE 191
L I + A ++ KL + +G G++ + AA + ACR +P+T KE+++V
Sbjct: 107 LTFGISNTACKILSKLDKKNLRG---GKSLRGLCAASVSRACRQVNIPKTLKEISAV--- 160
Query: 192 GAAAKKEIGRLTTLIKKHLG 211
KEI + L+ G
Sbjct: 161 ANVDMKEINKAVKLLGDSFG 180
>AT5G39230.1 | chr5:15709474-15709925 FORWARD LENGTH=120
Length = 119
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 26/33 (78%)
Query: 12 CPDCRRATAVVLDHTTGDTICTECALVLDARYI 44
C DC++ T V+D+ +GDTICTEC L+LD+ YI
Sbjct: 6 CLDCKKRTDTVIDYRSGDTICTECGLILDSHYI 38
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.135 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,006,153
Number of extensions: 221107
Number of successful extensions: 467
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 448
Number of HSP's successfully gapped: 7
Length of query: 316
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 217
Effective length of database: 8,392,385
Effective search space: 1821147545
Effective search space used: 1821147545
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)